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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026063 through 18771 annotations produced 2 hits



KP78a /// KP78b (KP78a /// KP78b):

Annotation Number : CG6715
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026063 /// FBgn0026064
Gbrowse : chr3R:7174249-7176367 (-) // 100.0 //
Probeset : 1636876_at
Accessions : protein= NP_001163587; /// NP_650065; /// NP_650066;, nucleotide= NM_001170116; /// NM_141808; /// NM_141809;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0026063 /// FBgn0026064.
Homophila reports that CG6715 is a close match (1e-11) to human gene ANKK1 (NP_848605), a gene associated with Dopamine receptor D2, reduced brain density of (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head1 00 of 4 0.60None
Eye0 00 of 4 0.25Down
Thoracicoabdominal ganglion2 10 of 4 1.00None
Salivary gland5 30 of 4 2.10None
Crop4 10 of 4 1.60None
Midgut8 20 of 4 3.00None
Tubule2 00 of 4 1.00None
Hindgut1 00 of 4 0.60None
Heart1 00 of 4 0.51None
Fat body3 10 of 4 1.23None
Ovary1 00 of 4 0.60None
Testis3 00 of 4 1.30None
Male accessory glands3 10 of 4 1.30None
Virgin spermatheca4 10 of 4 1.52None
Mated spermatheca4 10 of 4 1.69None
Adult carcass6 10 of 4 2.40None
Larval CNS8 14 of 4 3.27Up
Larval Salivary gland10 21 of 4 3.72None
Larval midgut9 20 of 4 3.28None
Larval tubule1 00 of 4 0.60None
Larval hindgut2 00 of 4 1.03None
Larval fat body6 10 of 4 2.20Up
Larval trachea1 00 of 4 0.57None
Larval carcass1 00 of 4 0.59None
S2 cells (growing)10 03 of 4 3.89Up
Whole fly2 00 of 4



KP78a /// KP78b (KP78a /// KP78b):

Annotation Number : CG17216
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026063 /// FBgn0026064
Gbrowse : chr3R:7172079-7174163 (-) // 100.0 //
Probeset : 1639894_at
Accessions : protein= NP_001163587; /// NP_650065; /// NP_650066;, nucleotide= NM_001170116; /// NM_141808; /// NM_141809;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0026063 /// FBgn0026064.
Homophila reports that CG17216 is a close match (3e-11) to human gene ACVR2B;ACTRIIB (NP_001097), a gene associated with Heterotaxy, visceral, 4, autosomal (3).
BioGrid reports that CG17216 interacts with CG13625 CG3018 CG31211 CG6191 CG6987 CG3327 CG7948 CG2865 CG8667 CG4602 CG8929 CG2189 CG11266 CG33553 CG9915 CG2102 CG8811 CG9776 CG33109 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.20Down
Head5 10 of 4 0.20Down
Eye6 10 of 4 0.30Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland7 20 of 4 0.33Down
Crop6 10 of 4 0.30Down
Midgut11 10 of 4 0.50Down
Tubule2 00 of 4 0.10Down
Hindgut6 20 of 4 0.30Down
Heart4 11 of 4 0.20Down
Fat body2 10 of 4 0.13Down
Ovary4 00 of 4 0.20Down
Testis243 74 of 410.80Up
Male accessory glands3 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.08Down
Mated spermatheca4 10 of 4 0.19Down
Adult carcass10 10 of 4 0.50Down
Larval CNS210 184 of 4 9.33Up
Larval Salivary gland9 10 of 4 0.42Down
Larval midgut6 10 of 4 0.28Down
Larval tubule7 20 of 4 0.30Down
Larval hindgut59 24 of 4 2.66Up
Larval fat body54 253 of 4 2.40None
Larval trachea62 74 of 4 2.79Up
Larval carcass27 42 of 4 1.20None
S2 cells (growing)45 04 of 4 2.02Up
Whole fly22 24 of 4

Looking for FBgn0026063. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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