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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026076 through 18771 annotations produced 1 hits



Ubiquitin-like 3 (UBL3):

Annotation Number : CG9038
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026076
Gbrowse : chrX:15744396-15747189 (-) // 100.0 //
Probeset : 1624675_at
Accessions : protein= NP_001162763; /// NP_573083; /// NP_996453;, nucleotide= NM_001169292; /// NM_132855; /// NM_206730;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0026076.
TRiP has 1 RNAi stocks for FBgn0026076 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026076 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain628 154 of 4 2.70Up
Head281 134 of 4 1.20Up
Eye844 154 of 4 3.67Up
Thoracicoabdominal ganglion730 114 of 4 3.20Up
Salivary gland209 154 of 4 0.91None
Crop291 94 of 4 1.30Up
Midgut156 94 of 4 0.70Down
Tubule433 134 of 4 1.90Up
Hindgut246 54 of 4 1.10None
Heart461 144 of 4 2.01Up
Fat body166 224 of 4 0.73Down
Ovary427 54 of 4 1.90Up
Testis127 94 of 4 0.60Down
Male accessory glands146 84 of 4 0.60Down
Virgin spermatheca480 194 of 4 2.09Up
Mated spermatheca555 624 of 4 2.41Up
Adult carcass185 34 of 4 0.80Down
Larval CNS353 144 of 4 1.54Up
Larval Salivary gland158 84 of 4 0.69Down
Larval midgut263 74 of 4 1.15Up
Larval tubule378 114 of 4 1.60Up
Larval hindgut304 154 of 4 1.32Up
Larval fat body88 14 of 4 0.40Down
Larval trachea538 324 of 4 2.34Up
Larval carcass276 204 of 4 1.20None
S2 cells (growing)208 74 of 4 0.91None
Whole fly230 94 of 4

Looking for FBgn0026076. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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