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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026079 through 18771 annotations produced 1 hits



(CG6133):

Annotation Number : CG6133
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026079
Gbrowse : chrX:4005179-4007767 (-) // 100.0 //
Probeset : 1637489_at
Accessions : protein= NP_652007;, nucleotide= NM_143750;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from electronic annotatio
Interpro : 0000049 // tRNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic an
FlyMine data for FBgn0026079.
BDGP gene expression has embryonic in situ data for EG:EG0007.9: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0026079 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 14 of 4 0.60Down
Head30 23 of 4 0.60Down
Eye21 04 of 4 0.40Down
Thoracicoabdominal ganglion43 14 of 4 0.80Down
Salivary gland34 60 of 4 0.64Down
Crop45 24 of 4 0.90None
Midgut40 52 of 4 0.80None
Tubule32 53 of 4 0.60Down
Hindgut30 22 of 4 0.60Down
Heart28 24 of 4 0.54Down
Fat body44 24 of 4 0.84Down
Ovary89 34 of 4 1.70Up
Testis25 24 of 4 0.50Down
Male accessory glands88 34 of 4 1.70Up
Virgin spermatheca58 34 of 4 1.11None
Mated spermatheca90 54 of 4 1.72Up
Adult carcass38 31 of 4 0.70Down
Larval CNS87 44 of 4 1.66Up
Larval Salivary gland113 74 of 4 2.15Up
Larval midgut36 20 of 4 0.68Down
Larval tubule28 13 of 4 0.50Down
Larval hindgut50 64 of 4 0.95None
Larval fat body27 22 of 4 0.50Down
Larval trachea66 184 of 4 1.27None
Larval carcass66 123 of 4 1.25None
S2 cells (growing)83 14 of 4 1.58Up
Whole fly52 24 of 4

Looking for FBgn0026079. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime