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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026136 through 18771 annotations produced 1 hits



chr2R:16177131-16178056 (+) // 100.0 // (Casein kinase II beta2 subunit):

Annotation Number : CG8914
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632660_at
Accessions : protein= , nucleotide= NP_477407;
Pathway : 0006468 // protein phosphorylation // inferred from sequence or structural similarity /// 0006468 // protein phosphoryla
Interpro : 0005956 // protein kinase CK2 complex // inferred from electronic annotation /// 0005956 // protein kinase CK2 complex /
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head3 00 of 4 0.10Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland15 71 of 4 0.25Down
Crop5 10 of 4 0.10Down
Midgut4 20 of 4 0.10Down
Tubule3 00 of 4 0.00Down
Hindgut6 10 of 4 0.10Down
Heart2 10 of 4 0.04Down
Fat body10 00 of 4 0.17Down
Ovary3 10 of 4 0.10Down
Testis799 194 of 413.10Up
Male accessory glands7 20 of 4 0.10Down
Virgin spermatheca6 00 of 4 0.10Down
Mated spermatheca3 10 of 4 0.05Down
Adult carcass11 30 of 4 0.20Down
Larval CNS2 10 of 4 0.04Down
Larval Salivary gland6 10 of 4 0.10Down
Larval midgut2 00 of 4 0.04Down
Larval tubule3 10 of 4 0.10Down
Larval hindgut4 10 of 4 0.07Down
Larval fat body60 272 of 4 1.00None
Larval trachea5 51 of 4 0.08Down
Larval carcass4 10 of 4 0.08Down
S2 cells (growing)4 10 of 4 0.08Down
Whole fly61 24 of 4

Looking for FBgn0026136. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime