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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026148 through 18771 annotations produced 1 hits



(CG12253):

Annotation Number : CG12253
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026148
Gbrowse : chr2L:10987816-10989241 (+) // 100.0 //
Probeset : 1627843_at
Accessions : protein= NP_652056;, nucleotide= NM_143799;
FlyMine data for FBgn0026148.
BDGP gene expression has embryonic in situ data for BEST:LD08487: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0026148 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain133 ± 54 of 4 1.30Up
Head49 ± 54 of 4 0.50Down
Eye51 ± 54 of 4 0.51Down
Thoracicoabdominal ganglion87 ± 34 of 4 0.90None
Salivary gland38 ± 54 of 4 0.38Down
Crop37 ± 44 of 4 0.40Down
Midgut10 ± 10 of 4 0.10Down
Tubule44 ± 04 of 4 0.40Down
Hindgut27 ± 04 of 4 0.30Down
Heart19 ± 24 of 4 0.19Down
Fat body6 ± 20 of 4 0.07Down
Ovary258 ± 44 of 4 2.60Up
Testis47 ± 14 of 4 0.50Down
Male accessory glands17 ± 20 of 4 0.20Down
Virgin spermatheca15 ± 21 of 4 0.16Down
Mated spermatheca11 ± 10 of 4 0.12Down
Adult carcass16 ± 40 of 4 0.20Down
Larval CNS164 ± 104 of 4 1.63Up
Larval Salivary gland20 ± 32 of 4 0.21Down
Larval midgut9 ± 30 of 4 0.09Down
Larval tubule38 ± 24 of 4 0.40Down
Larval hindgut25 ± 14 of 4 0.26Down
Larval fat body24 ± 14 of 4 0.20Down
Larval trachea33 ± 34 of 4 0.33Down
Larval carcass13 ± 01 of 4 0.14Down
S2 cells (growing)38 ± 34 of 4 0.39Down
Whole fly101 ± 84 of 4

Looking for FBgn0026148. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime