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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026192 through 18771 annotations produced 1 hits



par-6 (par-6):

Annotation Number : CG5884
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026192
Gbrowse : chrX:17597361-17601129 (+) // 100.0 //
Probeset : 1625748_s_at
Accessions : protein= NP_573238;, nucleotide= NM_133010;
Pathway : engulfment // inferred from mutant phenotype /// 0007155 // cell adhesion // inferred from mutant phenotype /// 0007298
Interpro : 0005737 // cytoplasm // non-traceable author statement /// 0005938 // cell cortex // traceable author statement /// 0016
FlyMine data for FBgn0026192.
BioGrid reports that CG5884 interacts with CG8384 CG10261 .
TRiP has 4 RNAi stocks for FBgn0026192 available for purchase.
VDRC has 4 RNAi stocks for FBgn0026192 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain381 54 of 4 1.60Up
Head565 294 of 4 2.40Up
Eye1566 754 of 4 6.75Up
Thoracicoabdominal ganglion332 64 of 4 1.40Up
Salivary gland388 174 of 4 1.67Up
Crop305 84 of 4 1.30Up
Midgut258 64 of 4 1.10Up
Tubule139 34 of 4 0.60Down
Hindgut337 74 of 4 1.50Up
Heart173 44 of 4 0.75Down
Fat body177 394 of 4 0.76None
Ovary322 104 of 4 1.40Up
Testis55 54 of 4 0.20Down
Male accessory glands208 44 of 4 0.90Down
Virgin spermatheca123 174 of 4 0.53Down
Mated spermatheca123 94 of 4 0.53Down
Adult carcass267 154 of 4 1.20None
Larval CNS393 264 of 4 1.69Up
Larval Salivary gland458 124 of 4 1.98Up
Larval midgut395 414 of 4 1.70Up
Larval tubule480 54 of 4 2.10Up
Larval hindgut455 124 of 4 1.96Up
Larval fat body337 144 of 4 1.50Up
Larval trachea420 154 of 4 1.81Up
Larval carcass262 74 of 4 1.13Up
S2 cells (growing)538 74 of 4 2.32Up
Whole fly232 24 of 4

Looking for FBgn0026192. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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