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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026199 through 18771 annotations produced 1 hits



Myoglianin (myoglianin):

Annotation Number : CG1838
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026199
Gbrowse : chr4:711892-716675 (-) // 100.0 //
Probeset : 1637161_s_at
Accessions : protein= NP_524627; /// NP_726604; /// NP_726605; /// NP_726606;, nucleotide= NM_079888; /// NM_166786; /// NM_166787; /// NM_166788;
Interpro : 0008083 // growth factor activity // inferred from sequence or structural similarity /// 0008083 // growth factor activi
FlyMine data for FBgn0026199.
Homophila reports that CG1838 is a close match (3e-11) to human gene GDF1 (NP_001483), a gene associated with Double-outlet right ventricle, 217095 (3);Tetralogy of Fallot, 187500 (3);Transposition of great arteries, dextro-looped 3 (3).
TRiP has 3 RNAi stocks for FBgn0026199 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026199 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 34 of 4 1.90None
Head29 ± 74 of 4 1.80None
Eye14 ± 34 of 4 0.86None
Thoracicoabdominal ganglion19 ± 24 of 4 1.20None
Salivary gland56 ± 14 of 4 3.40Up
Crop40 ± 34 of 4 2.40Up
Midgut22 ± 34 of 4 1.40None
Tubule15 ± 14 of 4 0.90None
Hindgut63 ± 44 of 4 3.80Up
Heart28 ± 24 of 4 1.69Up
Fat body43 ± 104 of 4 2.59Up
Ovary4 ± 01 of 4 0.30Down
Testis7 ± 03 of 4 0.40Down
Male accessory glands18 ± 14 of 4 1.10None
Virgin spermatheca16 ± 14 of 4 0.98None
Mated spermatheca17 ± 34 of 4 1.06None
Adult carcass29 ± 44 of 4 1.70None
Larval CNS32 ± 74 of 4 1.92Up
Larval Salivary gland27 ± 24 of 4 1.64Up
Larval midgut9 ± 12 of 4 0.56None
Larval tubule38 ± 34 of 4 2.30Up
Larval hindgut27 ± 14 of 4 1.65Up
Larval fat body15 ± 24 of 4 0.90None
Larval trachea22 ± 34 of 4 1.32None
Larval carcass30 ± 44 of 4 1.83Up
S2 cells (growing)96 ± 24 of 4 5.78Up
Whole fly16 ± 34 of 4

Looking for FBgn0026199. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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