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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026207 through 18771 annotations produced 1 hits



members only (mbo):

Annotation Number : CG6819
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026207
Gbrowse : chr3R:8502207-8504766 (-) // 100.0 //
Probeset : 1636705_at
Accessions : protein= NP_524330;, nucleotide= NM_079606;
Pathway : open tracheal system // traceable author statement /// 0046826 // negative regulation of protein export from nucleus //
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay
FlyMine data for FBgn0026207.
BioGrid reports that CG6819 interacts with CG9951 CG6856 CG7264 CG8571 CG8609 CG13387 CG13387 .
VDRC has 4 RNAi stocks for FBgn0026207 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain26 14 of 4 0.40Down
Head23 04 of 4 0.40Down
Eye25 14 of 4 0.42Down
Thoracicoabdominal ganglion32 34 of 4 0.50Down
Salivary gland39 33 of 4 0.66Down
Crop36 24 of 4 0.60Down
Midgut25 24 of 4 0.40Down
Tubule27 14 of 4 0.50Down
Hindgut27 14 of 4 0.50Down
Heart38 44 of 4 0.63Down
Fat body44 114 of 4 0.73None
Ovary146 34 of 4 2.40Up
Testis36 24 of 4 0.60Down
Male accessory glands41 34 of 4 0.70Down
Virgin spermatheca37 54 of 4 0.62Down
Mated spermatheca44 24 of 4 0.73Down
Adult carcass34 54 of 4 0.60Down
Larval CNS178 64 of 4 2.96Up
Larval Salivary gland69 54 of 4 1.15None
Larval midgut22 14 of 4 0.38Down
Larval tubule37 14 of 4 0.60Down
Larval hindgut34 04 of 4 0.57Down
Larval fat body37 54 of 4 0.60Down
Larval trachea65 154 of 4 1.08None
Larval carcass41 14 of 4 0.68Down
S2 cells (growing)98 14 of 4 1.64Up
Whole fly60 34 of 4

Looking for FBgn0026207. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime