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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026239 through 18771 annotations produced 1 hits



GUKholder (gukh):

Annotation Number : CG31043
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026239
Gbrowse : chr3R:14809746-14848160 (+) // 100.0 //
Probeset : 1635427_a_at
Accessions : protein= NP_001027192; /// NP_001097834; /// NP_732393; /// NP_732394;, nucleotide= NM_001032021; /// NM_001104364; /// NM_169845; /// NM_169846;
Pathway : 0042734 // presynaptic membrane // inferred from direct assay /// 0043195 // terminal button // inferred from direct ass
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0026239.
BDGP gene expression has embryonic in situ data for gukh: 47 pix of staining in 35 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 ± 24 of 4 1.20Up
Head64 ± 14 of 4 0.80None
Eye70 ± 34 of 4 0.92None
Thoracicoabdominal ganglion88 ± 34 of 4 1.20None
Salivary gland21 ± 31 of 4 0.29Down
Crop52 ± 64 of 4 0.70Down
Midgut91 ± 34 of 4 1.20Up
Tubule157 ± 134 of 4 2.10Up
Hindgut83 ± 74 of 4 1.10None
Heart40 ± 34 of 4 0.53Down
Fat body48 ± 14 of 4 0.64Down
Ovary156 ± 14 of 4 2.10Up
Testis112 ± 34 of 4 1.50Up
Male accessory glands77 ± 44 of 4 1.00None
Virgin spermatheca104 ± 34 of 4 1.37Up
Mated spermatheca130 ± 144 of 4 1.72Up
Adult carcass72 ± 94 of 4 1.00None
Larval CNS347 ± 224 of 4 4.57Up
Larval Salivary gland80 ± 74 of 4 1.06None
Larval midgut76 ± 34 of 4 1.00None
Larval tubule149 ± 34 of 4 2.00Up
Larval hindgut92 ± 24 of 4 1.21Up
Larval fat body139 ± 34 of 4 1.80Up
Larval trachea61 ± 84 of 4 0.81None
Larval carcass46 ± 44 of 4 0.61Down
S2 cells (growing)11 ± 12 of 4 0.15Down
Whole fly76 ± 44 of 4

Looking for FBgn0026239. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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