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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026255 through 18771 annotations produced 1 hits



clumsy (clumsy):

Annotation Number : CG8681
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026255
Gbrowse : chr2L:21206519-21211818 (+) // 100.0 //
Probeset : 1627435_at
Accessions : protein= NP_001036373; /// NP_523610;, nucleotide= NM_001042908; /// NM_078886;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0026255.
BDGP gene expression has embryonic in situ data for clumsy: 4 pix of staining in 1 body parts.
Homophila reports that CG8681 is a close match (4e-102) to human gene GLUR3;GRIA3;MRX94 (NP_015564), a gene associated with Mental retardation, X-linked 94, 300699 (3).
TRiP has 1 RNAi stocks for FBgn0026255 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026255 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head39 ± 24 of 4 1.20None
Eye5 ± 10 of 4 0.16Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.20Down
Salivary gland22 ± 70 of 4 0.67None
Crop106 ± 34 of 4 3.10Up
Midgut8 ± 12 of 4 0.20Down
Tubule5 ± 00 of 4 0.20Down
Hindgut37 ± 14 of 4 1.10None
Heart40 ± 34 of 4 1.20None
Fat body14 ± 43 of 4 0.44Down
Ovary1 ± 00 of 4 0.10Down
Testis31 ± 24 of 4 0.90None
Male accessory glands7 ± 20 of 4 0.20Down
Virgin spermatheca8 ± 00 of 4 0.25Down
Mated spermatheca14 ± 11 of 4 0.42Down
Adult carcass136 ± 104 of 4 4.00Up
Larval CNS4 ± 20 of 4 0.14Down
Larval Salivary gland5 ± 10 of 4 0.17Down
Larval midgut3 ± 10 of 4 0.11Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut4 ± 10 of 4 0.13Down
Larval fat body11 ± 11 of 4 0.30Down
Larval trachea1 ± 10 of 4 0.03Down
Larval carcass0 ± 00 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.06Down
Whole fly34 ± 14 of 4

Looking for FBgn0026255. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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