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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026257 through 18771 annotations produced 1 hits



anonymous fast evolving gene IG5 (cav):

Annotation Number : CG6219
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026257
Gbrowse : chr3R:20046863-20049250 (+) // 100.0 //
Probeset : 1638204_s_at
Accessions : protein= NP_524477; /// NP_732969; /// NP_732970; /// NP_732971;, nucleotide= NM_079753; /// NM_170133; /// NM_170134; /// NM_170135;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from direct assay /// 0000781 // chromosome
FlyMine data for FBgn0026257.
BDGP gene expression has embryonic in situ data for cav: 12 pix of staining in 10 body parts.
BioGrid reports that CG6219 interacts with CG8409 .
VDRC has 2 RNAi stocks for FBgn0026257 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 14 of 4 0.30Down
Head17 04 of 4 0.10Down
Eye24 14 of 4 0.16Down
Thoracicoabdominal ganglion87 24 of 4 0.60Down
Salivary gland10 30 of 4 0.07Down
Crop29 34 of 4 0.20Down
Midgut9 20 of 4 0.10Down
Tubule25 24 of 4 0.20Down
Hindgut19 04 of 4 0.10Down
Heart19 24 of 4 0.13Down
Fat body10 23 of 4 0.07Down
Ovary380 104 of 4 2.50Up
Testis258 104 of 4 1.70Up
Male accessory glands5 10 of 4 0.00Down
Virgin spermatheca16 24 of 4 0.11Down
Mated spermatheca18 14 of 4 0.12Down
Adult carcass17 43 of 4 0.10Down
Larval CNS159 74 of 4 1.06None
Larval Salivary gland12 13 of 4 0.08Down
Larval midgut10 11 of 4 0.07Down
Larval tubule23 14 of 4 0.20Down
Larval hindgut22 34 of 4 0.15Down
Larval fat body50 144 of 4 0.30Down
Larval trachea84 104 of 4 0.57Down
Larval carcass27 14 of 4 0.19Down
S2 cells (growing)94 54 of 4 0.63Down
Whole fly149 74 of 4

Looking for FBgn0026257. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime