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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026259 through 18771 annotations produced 1 hits



cytoplasmic Initiation Factor 2 (eIF5B):

Annotation Number : CG10840
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026259
Gbrowse : chr3L:3428657-3460602 (-) // 99.9 //
Probeset : 1639716_at
Accessions : protein= NP_651974;, nucleotide= NM_143717;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003743 // translation initiation factor activi
FlyMine data for FBgn0026259.
BioGrid reports that CG10840 interacts with CG12833 CG3081 CG3506 .
VDRC has 3 RNAi stocks for FBgn0026259 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain294 44 of 4 0.90Down
Head263 104 of 4 0.80Down
Eye225 44 of 4 0.66Down
Thoracicoabdominal ganglion342 144 of 4 1.00None
Salivary gland616 384 of 4 1.81Up
Crop422 54 of 4 1.20Up
Midgut349 84 of 4 1.00None
Tubule433 194 of 4 1.30Up
Hindgut283 104 of 4 0.80Down
Heart231 84 of 4 0.68Down
Fat body356 204 of 4 1.05None
Ovary533 74 of 4 1.60Up
Testis722 24 of 4 2.10Up
Male accessory glands572 174 of 4 1.70Up
Virgin spermatheca391 104 of 4 1.15Up
Mated spermatheca458 154 of 4 1.35Up
Adult carcass323 64 of 4 1.00None
Larval CNS505 224 of 4 1.48Up
Larval Salivary gland884 244 of 4 2.60Up
Larval midgut360 44 of 4 1.06None
Larval tubule402 94 of 4 1.20Up
Larval hindgut442 74 of 4 1.30Up
Larval fat body409 194 of 4 1.20Up
Larval trachea419 514 of 4 1.23Up
Larval carcass640 264 of 4 1.88Up
S2 cells (growing)1572 394 of 4 4.62Up
Whole fly340 74 of 4

Looking for FBgn0026259. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime