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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026261 through 18771 annotations produced 1 hits



bonsai (bonsai):

Annotation Number : CG4207
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026261
Gbrowse : chr2R:18525276-18526373 (+) // 100.0 //
Probeset : 1640375_at
Accessions : protein= NP_611691;, nucleotide= NM_137847;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from direct ass
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0026261.
BioGrid reports that CG4207 interacts with CG4654 CG6376 .
VDRC has 4 RNAi stocks for FBgn0026261 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain250 04 of 4 0.80Down
Head194 64 of 4 0.60Down
Eye139 64 of 4 0.46Down
Thoracicoabdominal ganglion292 174 of 4 1.00None
Salivary gland201 134 of 4 0.66Down
Crop210 54 of 4 0.70Down
Midgut236 44 of 4 0.80Down
Tubule242 84 of 4 0.80Down
Hindgut274 34 of 4 0.90None
Heart239 64 of 4 0.79Down
Fat body279 514 of 4 0.92None
Ovary512 154 of 4 1.70Up
Testis146 34 of 4 0.50Down
Male accessory glands126 124 of 4 0.40Down
Virgin spermatheca244 94 of 4 0.80Down
Mated spermatheca223 134 of 4 0.73Down
Adult carcass207 54 of 4 0.70Down
Larval CNS334 354 of 4 1.10None
Larval Salivary gland289 124 of 4 0.95None
Larval midgut169 84 of 4 0.56Down
Larval tubule121 64 of 4 0.40Down
Larval hindgut352 284 of 4 1.16None
Larval fat body140 114 of 4 0.50Down
Larval trachea289 324 of 4 0.95None
Larval carcass222 304 of 4 0.73None
S2 cells (growing)207 94 of 4 0.68Down
Whole fly304 164 of 4

Looking for FBgn0026261. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime