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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026313 through 18771 annotations produced 1 hits



X11L (X11L):

Annotation Number : CG5675
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026313
Gbrowse : chrX:17493658-17500141 (+) // 100.0 //
Probeset : 1629306_at
Accessions : protein= NP_001162781; /// NP_573224;, nucleotide= NM_001169310; /// NM_132996;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0026313.
BioGrid reports that CG5675 interacts with CG7808 CG9771 CG9795 .
TRiP has 1 RNAi stocks for FBgn0026313 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026313 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain246 74 of 4 2.00Up
Head98 74 of 4 0.80Down
Eye167 124 of 4 1.34Up
Thoracicoabdominal ganglion178 154 of 4 1.40Up
Salivary gland57 34 of 4 0.46Down
Crop112 34 of 4 0.90None
Midgut89 34 of 4 0.70Down
Tubule55 24 of 4 0.40Down
Hindgut79 14 of 4 0.60Down
Heart650 324 of 4 5.23Up
Fat body197 224 of 4 1.59Up
Ovary370 54 of 4 3.00Up
Testis23 24 of 4 0.20Down
Male accessory glands37 34 of 4 0.30Down
Virgin spermatheca120 94 of 4 0.97None
Mated spermatheca88 44 of 4 0.71Down
Adult carcass97 14 of 4 0.80Down
Larval CNS245 154 of 4 1.98Up
Larval Salivary gland93 64 of 4 0.75Down
Larval midgut139 104 of 4 1.12None
Larval tubule159 54 of 4 1.30Up
Larval hindgut100 24 of 4 0.81Down
Larval fat body226 224 of 4 1.80Up
Larval trachea282 74 of 4 2.28Up
Larval carcass112 74 of 4 0.90None
S2 cells (growing)222 14 of 4 1.79Up
Whole fly124 44 of 4

Looking for FBgn0026313. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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