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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026317 through 18771 annotations produced 1 hits



TSC1 (Tsc1):

Annotation Number : CG6147
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026317
Gbrowse : chr3R:19956031-19960376 (+) // 100.0 //
Probeset : 1640930_at
Accessions : protein= NP_477415;, nucleotide= NM_058067;
Pathway : 0005737 // cytoplasm // inferred from direct assay
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0019900 // kinase binding // inferred from physical
FlyMine data for FBgn0026317.
BDGP gene expression has embryonic in situ data for Tsc1: 4 pix of staining in 1 body parts.
Homophila reports that CG6147 is a close match (2e-39) to human gene LAM;TSC1 (NP_000359), a gene associated with Focal cortical dysplasia, Taylor balloon cell type, 607341 (3);Lymphangioleiomyomatosis, 606690 (3);Tuberous sclerosis-1, 191100 (3).
BioGrid reports that CG6147 interacts with CG8975 CG9028 CG6975 CG6975 CG6975 CG6975 CG4006 CG4006 CG4006 CG18402 CG18402 CG10539 CG10539 CG5092 CG5092 CG5092 .
TRiP has 3 RNAi stocks for FBgn0026317 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026317 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain178 104 of 4 1.10None
Head109 84 of 4 0.60Down
Eye83 44 of 4 0.49Down
Thoracicoabdominal ganglion209 134 of 4 1.20None
Salivary gland153 64 of 4 0.91None
Crop164 44 of 4 1.00None
Midgut129 44 of 4 0.80Down
Tubule96 54 of 4 0.60Down
Hindgut134 94 of 4 0.80None
Heart72 44 of 4 0.43Down
Fat body188 364 of 4 1.11None
Ovary411 114 of 4 2.40Up
Testis86 44 of 4 0.50Down
Male accessory glands250 104 of 4 1.50Up
Virgin spermatheca245 214 of 4 1.45Up
Mated spermatheca249 84 of 4 1.48Up
Adult carcass122 74 of 4 0.70Down
Larval CNS231 224 of 4 1.37Up
Larval Salivary gland221 114 of 4 1.31Up
Larval midgut138 24 of 4 0.82None
Larval tubule139 34 of 4 0.80None
Larval hindgut183 34 of 4 1.09None
Larval fat body135 44 of 4 0.80None
Larval trachea80 94 of 4 0.48Down
Larval carcass194 154 of 4 1.15None
S2 cells (growing)180 104 of 4 1.07None
Whole fly169 114 of 4

Looking for FBgn0026317. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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