FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0026319 through 18771 annotations produced 2 hits

TNF Receptor Associated Factor 1 (Traf4):

Annotation Number : CG3048
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026319
Gbrowse : chr2L:4371989-4380725 (+) // 100.0 //
Probeset : 1627704_a_at
Accessions : protein= NP_001097080; /// NP_477416; /// NP_477417;, nucleotide= NM_001103610; /// NM_058068; /// NM_058069;
Pathway : engulfment // inferred from mutant phenotype /// 0006952 // defense response // non-traceable author statement /// 0007
Interpro : thorax closure // inferred from genetic interaction /// 0048102 // autophagic cell death // inferred from expression pa
FlyMine data for FBgn0026319.
BDGP gene expression has embryonic in situ data for Traf1: 51 pix of staining in 24 body parts.
BioGrid reports that CG3048 interacts with CG6099 CG9541 CG5410 CG8446 CG3938 .
VDRC has 3 RNAi stocks for FBgn0026319 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	14 ± 1	4 of 4	0.40	Down
Head	40 ± 2	4 of 4	1.20	None
Eye	63 ± 3	4 of 4	1.79	Up
Thoracicoabdominal ganglion	13 ± 0	3 of 4	0.40	Down
Salivary gland	17 ± 2	0 of 4	0.50	Down
Crop	19 ± 0	4 of 4	0.60	Down
Midgut	37 ± 1	4 of 4	1.10	None
Tubule	22 ± 1	4 of 4	0.60	Down
Hindgut	73 ± 2	4 of 4	2.10	Up
Heart	312 ± 15	4 of 4	8.83	Up
Fat body	21 ± 7	3 of 4	0.61	Down
Ovary	15 ± 0	4 of 4	0.40	Down
Testis	5 ± 1	1 of 4	0.20	Down
Male accessory glands	10 ± 1	0 of 4	0.30	Down
Virgin spermatheca	12 ± 2	2 of 4	0.35	Down
Mated spermatheca	12 ± 2	3 of 4	0.36	Down
Adult carcass	55 ± 4	4 of 4	1.60	Up
Larval CNS	238 ± 41	4 of 4	6.76	Up
Larval Salivary gland	29 ± 4	4 of 4	0.82	None
Larval midgut	17 ± 2	0 of 4	0.48	Down
Larval tubule	38 ± 3	4 of 4	1.10	None
Larval hindgut	93 ± 8	4 of 4	2.64	Up
Larval fat body	16 ± 4	3 of 4	0.50	Down
Larval trachea	91 ± 14	4 of 4	2.59	Up
Larval carcass	37 ± 1	4 of 4	1.06	None
S2 cells (growing)	337 ± 12	4 of 4	9.55	Up
Whole fly	35 ± 2	4 of 4

TNF Receptor Associated Factor 1 (Traf4):

Annotation Number : CT35493
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026319
Gbrowse : chr2L:4362548-4362752 (+) // 100.0 //
Probeset : 1637171_at
Accessions : protein= NP_001097080; /// NP_477416; /// NP_477417;, nucleotide= NM_001103610; /// NM_058068; /// NM_058069;
Pathway : engulfment // inferred from mutant phenotype /// 0006952 // defense response // non-traceable author statement /// 0007
Interpro : thorax closure // inferred from genetic interaction /// 0048102 // autophagic cell death // inferred from expression pa
FlyMine data for FBgn0026319.
BDGP gene expression has embryonic in situ data for Traf1: 51 pix of staining in 24 body parts.
VDRC has 3 RNAi stocks for FBgn0026319 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	4.00	None
Head	3 ± 1	0 of 4	4.30	None
Eye	1 ± 0	0 of 4	2.71	None
Thoracicoabdominal ganglion	1 ± 0	0 of 4	1.60	None
Salivary gland	5 ± 3	0 of 4	8.07	None
Crop	0 ± 0	0 of 4	1.20	None
Midgut	3 ± 1	0 of 4	5.20	None
Tubule	1 ± 0	0 of 4	2.40	Up
Hindgut	0 ± 0	0 of 4	0.90	None
Heart	0 ± 0	0 of 4	0.96	None
Fat body	6 ± 1	0 of 4	9.00	Up
Ovary	1 ± 0	0 of 4	1.70	None
Testis	1 ± 0	0 of 4	1.90	None
Male accessory glands	3 ± 1	0 of 4	5.10	None
Virgin spermatheca	1 ± 0	0 of 4	1.68	None
Mated spermatheca	1 ± 0	0 of 4	1.86	None
Adult carcass	1 ± 0	0 of 4	2.60	None
Larval CNS	2 ± 2	0 of 4	3.64	None
Larval Salivary gland	6 ± 1	0 of 4	9.18	None
Larval midgut	2 ± 0	0 of 4	2.86	None
Larval tubule	1 ± 0	0 of 4	2.20	None
Larval hindgut	0 ± 0	0 of 4	1.14	None
Larval fat body	1 ± 0	0 of 4	2.40	Up
Larval trachea	0 ± 0	0 of 4	0.96	None
Larval carcass	3 ± 0	0 of 4	5.50	Up
S2 cells (growing)	1 ± 0	0 of 4	1.50	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0026319. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720