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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026326 through 18771 annotations produced 1 hits



TXBP181-like (Mad1):

Annotation Number : CG2072
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026326
Gbrowse : chr2R:5176451-5179059 (-) // 100.0 //
Probeset : 1641699_at
Accessions : protein= NP_610477;, nucleotide= NM_136633;
FlyMine data for FBgn0026326.
BDGP gene expression has embryonic in situ data for TXBP181-like: 14 pix of staining in 21 body parts.
Homophila reports that CG2072 is a close match (6e-24) to human gene MAD1L1;TXBP181 (NP_003541), a gene associated with Lymphoma, somatic (3);Prostate cancer, somatic, 176807 (3).
BioGrid reports that CG2072 interacts with CG32369 CG5516 CG7264 CG8235 CG8247 CG8328 .
TRiP has 1 RNAi stocks for FBgn0026326 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026326 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain266 34 of 4 2.10Up
Head100 54 of 4 0.80Down
Eye105 44 of 4 0.82None
Thoracicoabdominal ganglion198 54 of 4 1.50Up
Salivary gland71 74 of 4 0.56Down
Crop68 24 of 4 0.50Down
Midgut80 14 of 4 0.60Down
Tubule109 44 of 4 0.80Down
Hindgut73 24 of 4 0.60Down
Heart58 34 of 4 0.45Down
Fat body66 53 of 4 0.52Down
Ovary285 104 of 4 2.20Up
Testis59 34 of 4 0.50Down
Male accessory glands120 84 of 4 0.90None
Virgin spermatheca65 04 of 4 0.51Down
Mated spermatheca68 34 of 4 0.53Down
Adult carcass62 12 of 4 0.50Down
Larval CNS336 84 of 4 2.62Up
Larval Salivary gland159 44 of 4 1.24Up
Larval midgut67 44 of 4 0.52Down
Larval tubule78 14 of 4 0.60Down
Larval hindgut109 54 of 4 0.86None
Larval fat body52 04 of 4 0.40Down
Larval trachea128 74 of 4 1.00None
Larval carcass105 34 of 4 0.82None
S2 cells (growing)157 74 of 4 1.23Up
Whole fly128 84 of 4

Looking for FBgn0026326. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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