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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026361 through 18771 annotations produced 1 hits



septin (Sep-05):

Annotation Number : CG2916
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026361
Gbrowse : chr2R:3847628-3849427 (-) // 100.0 //
Probeset : 1624997_s_at
Accessions : protein= NP_651961; /// NP_724632;, nucleotide= NM_143704; /// NM_165578;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0005940 // septin ring // inferred from sequ
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable aut
FlyMine data for FBgn0026361.
BDGP gene expression has embryonic in situ data for Sep-05: 28 pix of staining in 23 body parts.
Homophila reports that CG2916 is a close match (5e-60) to human gene MSF;MSF1;NAPB;SEPT9 (NP_006631), a gene associated with Amyotrophy, hereditary neuralgic, 162100 (3);Leukemia, acute myeloid, therapy-related (1);Ovarian carcinoma (1).
TRiP has 1 RNAi stocks for FBgn0026361 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026361 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 04 of 4 0.20Down
Head5 11 of 4 0.10Down
Eye6 12 of 4 0.13Down
Thoracicoabdominal ganglion20 24 of 4 0.40Down
Salivary gland15 50 of 4 0.30Down
Crop6 21 of 4 0.10Down
Midgut14 14 of 4 0.30Down
Tubule9 12 of 4 0.20Down
Hindgut8 14 of 4 0.20Down
Heart6 12 of 4 0.13Down
Fat body11 43 of 4 0.22Down
Ovary102 14 of 4 2.00Up
Testis18 14 of 4 0.40Down
Male accessory glands14 23 of 4 0.30Down
Virgin spermatheca13 14 of 4 0.26Down
Mated spermatheca9 13 of 4 0.19Down
Adult carcass11 21 of 4 0.20Down
Larval CNS84 44 of 4 1.63Up
Larval Salivary gland6 12 of 4 0.13Down
Larval midgut13 24 of 4 0.27Down
Larval tubule9 02 of 4 0.20Down
Larval hindgut10 14 of 4 0.20Down
Larval fat body17 33 of 4 0.30Down
Larval trachea30 44 of 4 0.59Down
Larval carcass34 94 of 4 0.66None
S2 cells (growing)91 14 of 4 1.75Up
Whole fly52 24 of 4

Looking for FBgn0026361. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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