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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026369 through 18771 annotations produced 1 hits



Smad anchor for receptor activation (Sara):

Annotation Number : CG15667
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026369
Gbrowse : chr2R:17369423-17374618 (+) // 100.0 //
Probeset : 1639858_s_at
Accessions : protein= NP_524729; /// NP_726073;, nucleotide= NM_079990; /// NM_166451;
Pathway : 0005769 // early endosome // inferred from direct assay
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0005160 // transforming growth factor beta recep
FlyMine data for FBgn0026369.
Homophila reports that CG15667 is a close match (6e-11) to human gene CFD;PIP5K3 (NP_055855), a gene associated with Corneal fleck dystrophy, 121850 (3).
BioGrid reports that CG15667 interacts with CG32491 .
TRiP has 1 RNAi stocks for FBgn0026369 available for purchase.
VDRC has 1 RNAi stocks for FBgn0026369 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain189 54 of 4 2.50Up
Head111 24 of 4 1.40Up
Eye92 84 of 4 1.19None
Thoracicoabdominal ganglion214 34 of 4 2.80Up
Salivary gland179 23 of 4 2.32Up
Crop167 44 of 4 2.20Up
Midgut146 74 of 4 1.90Up
Tubule212 34 of 4 2.70Up
Hindgut207 54 of 4 2.70Up
Heart75 34 of 4 0.98None
Fat body93 74 of 4 1.21Up
Ovary147 54 of 4 1.90Up
Testis41 34 of 4 0.50Down
Male accessory glands70 84 of 4 0.90None
Virgin spermatheca82 24 of 4 1.06None
Mated spermatheca100 44 of 4 1.30Up
Adult carcass129 94 of 4 1.70Up
Larval CNS101 114 of 4 1.32Up
Larval Salivary gland121 24 of 4 1.57Up
Larval midgut173 94 of 4 2.25Up
Larval tubule232 94 of 4 3.00Up
Larval hindgut258 84 of 4 3.35Up
Larval fat body96 74 of 4 1.20None
Larval trachea103 174 of 4 1.34Up
Larval carcass148 133 of 4 1.93Up
S2 cells (growing)222 54 of 4 2.88Up
Whole fly77 44 of 4

Looking for FBgn0026369. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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