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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026370 through 18771 annotations produced 1 hits



SRPK (SRPK):

Annotation Number : CG8174
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026370
Gbrowse : chr2R:11268222-11275362 (+) // 100.0 //
Probeset : 1632130_s_at
Accessions : protein= NP_611034; /// NP_725458; /// NP_725459;, nucleotide= NM_137190; /// NM_166093; /// NM_166094;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0026370.
BDGP gene expression has embryonic in situ data for SRPK: 10 pix of staining in 12 body parts.
TRiP has 1 RNAi stocks for FBgn0026370 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026370 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain398 ± 54 of 4 4.50Up
Head184 ± 124 of 4 2.10Up
Eye279 ± 134 of 4 3.13Up
Thoracicoabdominal ganglion397 ± 154 of 4 4.50Up
Salivary gland199 ± 54 of 4 2.23Up
Crop218 ± 84 of 4 2.40Up
Midgut90 ± 24 of 4 1.00None
Tubule147 ± 14 of 4 1.70Up
Hindgut194 ± 34 of 4 2.20Up
Heart176 ± 44 of 4 1.98Up
Fat body138 ± 154 of 4 1.56Up
Ovary72 ± 54 of 4 0.80Down
Testis27 ± 34 of 4 0.30Down
Male accessory glands127 ± 64 of 4 1.40Up
Virgin spermatheca135 ± 74 of 4 1.51Up
Mated spermatheca135 ± 104 of 4 1.52Up
Adult carcass157 ± 64 of 4 1.80Up
Larval CNS381 ± 204 of 4 4.27Up
Larval Salivary gland294 ± 44 of 4 3.29Up
Larval midgut108 ± 64 of 4 1.21None
Larval tubule153 ± 44 of 4 1.70Up
Larval hindgut229 ± 104 of 4 2.57Up
Larval fat body108 ± 74 of 4 1.20None
Larval trachea331 ± 244 of 4 3.72Up
Larval carcass302 ± 114 of 4 3.39Up
S2 cells (growing)193 ± 54 of 4 2.16Up
Whole fly89 ± 14 of 4

Looking for FBgn0026370. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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