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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0026371 through 18771 annotations produced 1 hits

Sak kinase (SAK):

Annotation Number : CG7186
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026371
Gbrowse : chr3L:21505240-21508984 (-) // 100.0 //
Probeset : 1629805_at
Accessions : protein= NP_649324;, nucleotide= NM_141067;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005814 // centriole // inferred from direct assay /// 0
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0026371.
BDGP gene expression has embryonic in situ data for SAK: 22 pix of staining in 7 body parts.
Homophila reports that CG7186 is a close match (8e-11) to human gene MTC;NTRK1;TRKA (NP_002520), a gene associated with Insensitivity to pain, congenital, with anhidrosis, 256800 (3);Medullary thyroid carcinoma, familial, 155240 (3).
BioGrid reports that CG7186 interacts with CG13510 CG5825 CG14119 CG32381 CG15043 CG15676 CG15861 CG9046 CG14534 CG15006 CG13558 CG2948 CG17508 CG5708 CG14387 CG11182 CG17515 CG7281 CG11138 CG2944 CG14816 CG13806 CG32139 CG32045 CG5072 CG7948 CG11525 CG5568 CG5731 CG15218 CG1034 CG31679 CG18745 CG2865 CG12723 CG31811 CG16892 CG8667 CG18273 CG9930 CG8272 CG15112 CG11486 CG4184 CG13900 CG17964 CG8676 CG1765 CG5003 CG4851 CG3612 CG30497 CG10395 CG8181 .
TRiP has 1 RNAi stocks for FBgn0026371 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026371 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 04 of 4 2.10Up
Head15 14 of 4 1.30None
Eye16 14 of 4 1.34None
Thoracicoabdominal ganglion26 14 of 4 2.20Up
Salivary gland55 74 of 4 4.57Up
Crop35 04 of 4 3.00Up
Midgut44 44 of 4 3.70Up
Tubule13 13 of 4 1.10None
Hindgut20 24 of 4 1.70Up
Heart10 22 of 4 0.87None
Fat body14 14 of 4 1.19None
Ovary8 14 of 4 0.70None
Testis5 03 of 4 0.50None
Male accessory glands34 04 of 4 2.90Up
Virgin spermatheca15 14 of 4 1.25None
Mated spermatheca15 24 of 4 1.28None
Adult carcass10 01 of 4 0.80None
Larval CNS90 174 of 4 7.49Up
Larval Salivary gland47 64 of 4 3.95Up
Larval midgut45 44 of 4 3.80Up
Larval tubule37 14 of 4 3.10Up
Larval hindgut39 24 of 4 3.25Up
Larval fat body10 12 of 4 0.90None
Larval trachea46 14 of 4 3.88Up
Larval carcass24 04 of 4 2.01Up
S2 cells (growing)31 04 of 4 2.60Up
Whole fly12 24 of 4

Looking for FBgn0026371. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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