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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026372 through 18771 annotations produced 1 hits



Ribosomal protein L23A (RpL23A):

Annotation Number : CG7977
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026372
Gbrowse : chr3L:1667189-1668678 (-) // 100.0 //
Probeset : 1634917_at
Accessions : protein= NP_523886;, nucleotide= NM_079162;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electro
FlyMine data for FBgn0026372.
BDGP gene expression has embryonic in situ data for RpL23a: 4 pix of staining in 1 body parts.
BioGrid reports that CG7977 interacts with CG7987 CG8414 CG9511 .
VDRC has 1 RNAi stocks for FBgn0026372 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2961 924 of 4 0.80Down
Head4388 1174 of 4 1.10None
Eye5285 1154 of 4 1.36Up
Thoracicoabdominal ganglion3942 1644 of 4 1.00None
Salivary gland12204 3364 of 4 3.14Up
Crop5530 3284 of 4 1.40Up
Midgut4963 924 of 4 1.30Up
Tubule5493 874 of 4 1.40Up
Hindgut4702 1004 of 4 1.20Up
Heart6288 4414 of 4 1.62Up
Fat body5293 6914 of 4 1.36Up
Ovary3165 594 of 4 0.80Down
Testis1065 444 of 4 0.30Down
Male accessory glands8782 2434 of 4 2.30Up
Virgin spermatheca5032 1574 of 4 1.29Up
Mated spermatheca5292 3274 of 4 1.36Up
Adult carcass5287 1584 of 4 1.40Up
Larval CNS2604 1834 of 4 0.67Down
Larval Salivary gland7317 3184 of 4 1.88Up
Larval midgut4326 634 of 4 1.11None
Larval tubule4034 764 of 4 1.00None
Larval hindgut4017 564 of 4 1.03None
Larval fat body6923 7014 of 4 1.80Up
Larval trachea5859 1724 of 4 1.51Up
Larval carcass4493 3804 of 4 1.16None
S2 cells (growing)4359 1084 of 4 1.12None
Whole fly3889 1984 of 4

Looking for FBgn0026372. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime