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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026378 through 18771 annotations produced 1 hits



rab escort protein (Rep):

Annotation Number : CG8432
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026378
Gbrowse : chr2R:15379595-15381630 (+) // 100.0 //
Probeset : 1631388_at
Accessions : protein= NP_477420;, nucleotide= NM_058072;
Pathway : 0000922 // spindle pole // inferred from direct assay /// 0000922 // spindle pole // inferred from electronic annotation
Interpro : 0004663 // Rab geranylgeranyltransferase activity // inferred from sequence or structural similarity /// 0005096 // GTPa
FlyMine data for FBgn0026378.
Homophila reports that CG8432 is a close match (4e-22) to human gene GDI1;MRX41;MRX48;RABGD1A (NP_001484), a gene associated with Mental retardation, X-linked nonspecific, 309541 (3).
TRiP has 1 RNAi stocks for FBgn0026378 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain97 44 of 4 1.30Up
Head68 44 of 4 0.90None
Eye49 34 of 4 0.65Down
Thoracicoabdominal ganglion142 74 of 4 1.90Up
Salivary gland131 94 of 4 1.73Up
Crop105 44 of 4 1.40Up
Midgut117 84 of 4 1.50Up
Tubule150 94 of 4 2.00Up
Hindgut93 54 of 4 1.20Up
Heart79 54 of 4 1.05None
Fat body68 84 of 4 0.89None
Ovary131 14 of 4 1.70Up
Testis11 00 of 4 0.10Down
Male accessory glands68 104 of 4 0.90None
Virgin spermatheca50 24 of 4 0.67Down
Mated spermatheca67 44 of 4 0.88None
Adult carcass51 54 of 4 0.70Down
Larval CNS115 24 of 4 1.52Up
Larval Salivary gland63 104 of 4 0.84None
Larval midgut95 44 of 4 1.26Up
Larval tubule134 64 of 4 1.80Up
Larval hindgut118 34 of 4 1.56Up
Larval fat body46 63 of 4 0.60Down
Larval trachea113 104 of 4 1.49Up
Larval carcass77 84 of 4 1.02None
S2 cells (growing)224 64 of 4 2.95Up
Whole fly76 34 of 4

Looking for FBgn0026378. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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