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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026380 through 18771 annotations produced 1 hits



20s proteasome (Prosbeta3):

Annotation Number : CG11981
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026380
Gbrowse : chr3R:4831034-4831948 (-) // 100.0 //
Probeset : 1623021_at
Accessions : protein= NP_649858;, nucleotide= NM_141601;
Pathway : 0000502 // proteasome complex // non-traceable author statement /// 0000502 // proteasome complex // inferred from elect
Interpro : 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004175 // endopeptidase activi
FlyMine data for FBgn0026380.
BioGrid reports that CG11981 interacts with CG12985 CG13138 CG13085 CG1316 CG13966 CG1453 CG2047 CG2238 CG32030 CG32297 CG6175 CG7763 CG9121 CG9316 .
TRiP has 1 RNAi stocks for FBgn0026380 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026380 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain424 ± 154 of 4 0.30Down
Head721 ± 234 of 4 0.60Down
Eye523 ± 214 of 4 0.41Down
Thoracicoabdominal ganglion498 ± 114 of 4 0.40Down
Salivary gland1083 ± 234 of 4 0.86Down
Crop1414 ± 214 of 4 1.10Up
Midgut1110 ± 264 of 4 0.90Down
Tubule718 ± 344 of 4 0.60Down
Hindgut937 ± 234 of 4 0.70Down
Heart2373 ± 1054 of 4 1.88Up
Fat body2065 ± 1874 of 4 1.63Up
Ovary1442 ± 244 of 4 1.10Up
Testis1142 ± 124 of 4 0.90None
Male accessory glands1037 ± 474 of 4 0.80Down
Virgin spermatheca941 ± 464 of 4 0.75Down
Mated spermatheca820 ± 554 of 4 0.65Down
Adult carcass1818 ± 354 of 4 1.40Up
Larval CNS1242 ± 534 of 4 0.98None
Larval Salivary gland2181 ± 1904 of 4 1.73Up
Larval midgut1680 ± 1264 of 4 1.33Up
Larval tubule2581 ± 644 of 4 2.00Up
Larval hindgut1494 ± 884 of 4 1.18None
Larval fat body1632 ± 1104 of 4 1.30Up
Larval trachea1395 ± 754 of 4 1.10None
Larval carcass2257 ± 1664 of 4 1.79Up
S2 cells (growing)1026 ± 144 of 4 0.81Down
Whole fly1263 ± 394 of 4

Looking for FBgn0026380. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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