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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026386 through 18771 annotations produced 1 hits



Olfactory receptor 47E.1 (Or47a):

Annotation Number : CG13225
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026386
Gbrowse : chr2R:7137872-7139420 (+) // 100.0 //
Probeset : 1638902_at
Accessions : protein= NP_523689;, nucleotide= NM_078965;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0026386.
VDRC has 3 RNAi stocks for FBgn0026386 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.90None
Head6 10 of 4 7.30Up
Eye1 00 of 4 1.58None
Thoracicoabdominal ganglion1 00 of 4 1.90None
Salivary gland4 30 of 4 5.47None
Crop3 10 of 4 4.00None
Midgut1 00 of 4 2.10None
Tubule0 00 of 4 1.00None
Hindgut2 10 of 4 2.30None
Heart1 00 of 4 1.25None
Fat body0 00 of 4 0.78None
Ovary0 00 of 4 1.00None
Testis0 00 of 4 0.60None
Male accessory glands3 10 of 4 3.40None
Virgin spermatheca2 00 of 4 2.17None
Mated spermatheca3 10 of 4 4.33None
Adult carcass5 20 of 4 5.60None
Larval CNS2 00 of 4 2.22None
Larval Salivary gland1 00 of 4 1.94None
Larval midgut2 10 of 4 2.64None
Larval tubule2 10 of 4 2.80None
Larval hindgut0 00 of 4 0.75None
Larval fat body1 00 of 4 1.90None
Larval trachea0 00 of 4 0.42None
Larval carcass2 10 of 4 2.36None
S2 cells (growing)1 00 of 4 2.08None
Whole fly0 00 of 4

Looking for FBgn0026386. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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