FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0026393 through 18771 annotations produced 1 hits

Olfactory receptor 25A.1 (Or43b):

Annotation Number : CG17853
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026393
Gbrowse : chr2R:3808478-3810048 (-) // 100.0 //
Probeset : 1634800_at
Accessions : protein= NP_523656;, nucleotide= NM_078932;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0026393.
VDRC has 3 RNAi stocks for FBgn0026393 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	42 ± 2	4 of 4	5.00	Up
Head	23 ± 3	0 of 4	2.80	Up
Eye	25 ± 1	0 of 4	3.06	Up
Thoracicoabdominal ganglion	46 ± 3	2 of 4	5.50	Up
Salivary gland	17 ± 2	0 of 4	2.09	Up
Crop	6 ± 3	0 of 4	0.80	None
Midgut	8 ± 1	0 of 4	1.00	None
Tubule	7 ± 0	0 of 4	0.90	None
Hindgut	8 ± 1	0 of 4	1.00	None
Heart	31 ± 1	0 of 4	3.74	Up
Fat body	8 ± 2	0 of 4	0.96	None
Ovary	12 ± 0	0 of 4	1.50	Up
Testis	19 ± 1	0 of 4	2.30	Up
Male accessory glands	25 ± 1	0 of 4	3.10	Up
Virgin spermatheca	9 ± 2	0 of 4	1.07	None
Mated spermatheca	10 ± 1	0 of 4	1.18	None
Adult carcass	1 ± 0	0 of 4	0.20	Down
Larval CNS	29 ± 1	0 of 4	3.46	Up
Larval Salivary gland	2 ± 1	0 of 4	0.34	Down
Larval midgut	3 ± 0	0 of 4	0.38	Down
Larval tubule	6 ± 2	0 of 4	0.70	None
Larval hindgut	3 ± 1	0 of 4	0.46	None
Larval fat body	3 ± 2	0 of 4	0.50	None
Larval trachea	12 ± 1	0 of 4	1.43	Up
Larval carcass	7 ± 2	0 of 4	0.91	None
S2 cells (growing)	18 ± 2	0 of 4	2.20	Up
Whole fly	8 ± 1	0 of 4

Looking for FBgn0026393. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720