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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026399 through 18771 annotations produced 1 hits



():

Annotation Number : CG9700
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026399
Gbrowse : chr3R:4460191-4461606 (-) // 100.0 //
Probeset : 1632564_at
Accessions : protein= , nucleotide=
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0026399.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.50None
Head7 10 of 4 6.80Up
Eye1 00 of 4 1.07None
Thoracicoabdominal ganglion2 00 of 4 1.80None
Salivary gland7 00 of 4 6.62Up
Crop8 20 of 4 7.60None
Midgut3 00 of 4 3.40None
Tubule3 00 of 4 2.70Up
Hindgut5 10 of 4 5.10None
Heart1 00 of 4 1.07None
Fat body2 00 of 4 1.82None
Ovary1 00 of 4 0.90None
Testis2 00 of 4 2.00None
Male accessory glands8 10 of 4 7.20Up
Virgin spermatheca2 10 of 4 2.53None
Mated spermatheca4 10 of 4 3.53None
Adult carcass5 20 of 4 5.20None
Larval CNS2 10 of 4 2.53None
Larval Salivary gland6 20 of 4 5.80None
Larval midgut3 10 of 4 2.84None
Larval tubule7 10 of 4 6.70Up
Larval hindgut2 00 of 4 1.82None
Larval fat body6 10 of 4 6.20Up
Larval trachea1 00 of 4 1.56None
Larval carcass4 10 of 4 4.20None
S2 cells (growing)1 00 of 4 0.91None
Whole fly1 00 of 4

Looking for FBgn0026399. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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