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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0026400 through 18771 annotations produced 1 hits

Noa36 (Noa36):

Annotation Number : CG10009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026400
Gbrowse : chr3R:24423779-24425001 (-) // 100.0 //
Probeset : 1640673_at
Accessions : protein= NP_651622;, nucleotide= NM_143365;
Pathway : "0000775 // chromosome
Interpro : centromeric region // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electroni
FlyMine data for FBgn0026400.
BDGP gene expression has embryonic in situ data for Noa36: 21 pix of staining in 15 body parts.
BioGrid reports that CG10009 interacts with CG11635 CG3062 CG12679 CG14546 CG1792 CG31122 CG32183 CG3319 CG6945 CG9778 CG1133 .
VDRC has 3 RNAi stocks for FBgn0026400 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain219 104 of 4 0.60Down
Head213 34 of 4 0.60Down
Eye339 44 of 4 0.89None
Thoracicoabdominal ganglion212 94 of 4 0.60Down
Salivary gland430 104 of 4 1.13None
Crop339 74 of 4 0.90None
Midgut235 84 of 4 0.60Down
Tubule333 164 of 4 0.90Down
Hindgut262 74 of 4 0.70Down
Heart250 64 of 4 0.66Down
Fat body246 334 of 4 0.65Down
Ovary564 94 of 4 1.50Up
Testis471 104 of 4 1.20Up
Male accessory glands320 164 of 4 0.80None
Virgin spermatheca226 84 of 4 0.59Down
Mated spermatheca206 134 of 4 0.54Down
Adult carcass234 24 of 4 0.60Down
Larval CNS291 134 of 4 0.76Down
Larval Salivary gland679 574 of 4 1.78Up
Larval midgut184 74 of 4 0.48Down
Larval tubule298 54 of 4 0.80Down
Larval hindgut274 114 of 4 0.72Down
Larval fat body229 104 of 4 0.60Down
Larval trachea478 524 of 4 1.25Up
Larval carcass339 114 of 4 0.89None
S2 cells (growing)427 74 of 4 1.12None
Whole fly382 224 of 4

Looking for FBgn0026400. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime