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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026401 through 18771 annotations produced 1 hits



Nipped B (Nipped-B):

Annotation Number : CG17704
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026401
Gbrowse : chr2R:577794-616494 (-) // 100.0 //
Probeset : 1639548_s_at
Accessions : protein= NP_001036451; /// NP_001036452; /// NP_001163052; /// NP_001163053; /// NP_001163054;, nucleotide= NM_001042986; /// NM_001042987; /// NM_001169581; /// NM_001169582; /// NM_001169583;
Pathway : DNA-dependent // inferred from mutant phenotype /// 0007049 // cell cycle // inferred from electronic annotation /// 00
Interpro : 0000795 // synaptonemal complex // inferred from direct assay /// 0000798 // nuclear cohesin complex // inferred from ph
FlyMine data for FBgn0026401.
Homophila reports that CG17704 is a close match (0) to human gene NIPBL;CDLS1 (NP_597677), a gene associated with Cornelia de Lange syndrome 1, 122470 (3).
BioGrid reports that CG17704 interacts with CG4203 CG5050 CG8118 CG10388 CG11387 CG3936 CG8573 CG33522 .
TRiP has 3 RNAi stocks for FBgn0026401 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.00None
Head3 00 of 4 1.00None
Eye3 10 of 4 0.93None
Thoracicoabdominal ganglion2 00 of 4 0.80None
Salivary gland6 20 of 4 1.73None
Crop5 10 of 4 1.40None
Midgut4 10 of 4 1.20None
Tubule6 00 of 4 1.80Up
Hindgut6 20 of 4 1.80None
Heart2 00 of 4 0.57None
Fat body9 30 of 4 2.60Up
Ovary5 00 of 4 1.40None
Testis3 10 of 4 0.80None
Male accessory glands7 30 of 4 2.10None
Virgin spermatheca5 21 of 4 1.51None
Mated spermatheca8 21 of 4 2.20None
Adult carcass11 40 of 4 3.00None
Larval CNS3 20 of 4 0.93None
Larval Salivary gland1 00 of 4 0.50None
Larval midgut5 10 of 4 1.57None
Larval tubule8 21 of 4 2.20None
Larval hindgut3 10 of 4 1.03None
Larval fat body7 30 of 4 1.90None
Larval trachea4 00 of 4 1.32None
Larval carcass8 10 of 4 2.21None
S2 cells (growing)2 10 of 4 0.57None
Whole fly3 10 of 4

Looking for FBgn0026401. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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