Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026404 through 18771 annotations produced 2 hits



Nedd2-like caspase (Nc):

Annotation Number : CG8091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026404
Gbrowse : chr3L:9961542-9964103 (+) // 100.0 //
Probeset : 1641607_at
Accessions : protein= NP_524017;, nucleotide= NM_079293;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0004175 // endopeptidase activity // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // i
FlyMine data for FBgn0026404.
Homophila reports that CG8091 is a close match (1e-20) to human gene ALPS2B;CASP8;MCH5 (NP_203519), a gene associated with Autoimmune lymphoproliferative syndrome, type IIB, 607271 (3);Hepatocellular carcinoma, somatic, 114550 (3);{Breast cancer, protection against}, 114480 (3);{Lung cancer, protection against}, 211980 (3).
BioGrid reports that CG8091 interacts with CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG5123 CG7425 CG4319 CG4319 CG4319 CG4319 CG4319 CG4345 CG4345 CG12919 CG12919 Dmel CR33010 CG12284 CG12284 .
TRiP has 1 RNAi stocks for FBgn0026404 available for purchase.
VDRC has 6 RNAi stocks for FBgn0026404 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 04 of 4 0.40Down
Head32 ± 33 of 4 0.30Down
Eye29 ± 14 of 4 0.24Down
Thoracicoabdominal ganglion30 ± 24 of 4 0.30Down
Salivary gland28 ± 40 of 4 0.23Down
Crop31 ± 00 of 4 0.30Down
Midgut65 ± 34 of 4 0.50Down
Tubule56 ± 43 of 4 0.50Down
Hindgut28 ± 21 of 4 0.20Down
Heart34 ± 74 of 4 0.28Down
Fat body22 ± 31 of 4 0.19Down
Ovary246 ± 44 of 4 2.00Up
Testis59 ± 14 of 4 0.50Down
Male accessory glands23 ± 22 of 4 0.20Down
Virgin spermatheca28 ± 02 of 4 0.23Down
Mated spermatheca23 ± 20 of 4 0.19Down
Adult carcass27 ± 32 of 4 0.20Down
Larval CNS134 ± 124 of 4 1.09None
Larval Salivary gland53 ± 30 of 4 0.44Down
Larval midgut67 ± 93 of 4 0.55Down
Larval tubule119 ± 64 of 4 1.00None
Larval hindgut93 ± 54 of 4 0.76Down
Larval fat body52 ± 54 of 4 0.40Down
Larval trachea158 ± 114 of 4 1.29Up
Larval carcass138 ± 204 of 4 1.13None
S2 cells (growing)279 ± 54 of 4 2.27Up
Whole fly122 ± 74 of 4



/// Nedd2-like caspase (CG8090 /// Nc):

Annotation Number : CG8090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033995
Gbrowse : chr2R:11086811-11088682 (-) // 100.0 //
Probeset : 1627473_at
Accessions : protein= NP_001163158; /// NP_611016;, nucleotide= NM_001169687; /// NM_137172;
FlyMine data for FBgn0033995.
TRiP has 1 RNAi stocks for FBgn0033995 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033995 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain208 ± 54 of 4 1.80Up
Head98 ± 64 of 4 0.80None
Eye74 ± 64 of 4 0.64Down
Thoracicoabdominal ganglion322 ± 84 of 4 2.80Up
Salivary gland240 ± 154 of 4 2.07Up
Crop90 ± 44 of 4 0.80Down
Midgut107 ± 64 of 4 0.90None
Tubule117 ± 54 of 4 1.00None
Hindgut98 ± 44 of 4 0.80Down
Heart114 ± 14 of 4 0.98None
Fat body101 ± 54 of 4 0.87Down
Ovary208 ± 24 of 4 1.80Up
Testis92 ± 14 of 4 0.80Down
Male accessory glands314 ± 184 of 4 2.70Up
Virgin spermatheca143 ± 64 of 4 1.23Up
Mated spermatheca173 ± 74 of 4 1.49Up
Adult carcass91 ± 44 of 4 0.80Down
Larval CNS141 ± 64 of 4 1.21Up
Larval Salivary gland394 ± 144 of 4 3.39Up
Larval midgut123 ± 54 of 4 1.06None
Larval tubule226 ± 64 of 4 2.00Up
Larval hindgut125 ± 34 of 4 1.08None
Larval fat body171 ± 84 of 4 1.50Up
Larval trachea121 ± 124 of 4 1.04None
Larval carcass114 ± 94 of 4 0.99None
S2 cells (growing)169 ± 24 of 4 1.46Up
Whole fly116 ± 34 of 4

Looking for FBgn0026404. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime