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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026404 through 18771 annotations produced 2 hits



Nedd2-like caspase (Nc):

Annotation Number : CG8091
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026404
Gbrowse : chr3L:9961542-9964103 (+) // 100.0 //
Probeset : 1641607_at
Accessions : protein= NP_524017;, nucleotide= NM_079293;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // inferred from electronic annotation /// 0
Interpro : 0004175 // endopeptidase activity // inferred from direct assay /// 0004197 // cysteine-type endopeptidase activity // i
FlyMine data for FBgn0026404.
Homophila reports that CG8091 is a close match (1e-20) to human gene ALPS2B;CASP8;MCH5 (NP_203519), a gene associated with Autoimmune lymphoproliferative syndrome, type IIB, 607271 (3);Hepatocellular carcinoma, somatic, 114550 (3);{Breast cancer, protection against}, 114480 (3);{Lung cancer, protection against}, 211980 (3).
BioGrid reports that CG8091 interacts with CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG12284 CG5123 CG7425 CG4319 CG4319 CG4319 CG4319 CG4319 CG4345 CG4345 CG12919 CG12919 Dmel CR33010 CG12284 CG12284 .
TRiP has 1 RNAi stocks for FBgn0026404 available for purchase.
VDRC has 6 RNAi stocks for FBgn0026404 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 04 of 4 0.40Down
Head32 33 of 4 0.30Down
Eye29 14 of 4 0.24Down
Thoracicoabdominal ganglion30 24 of 4 0.30Down
Salivary gland28 40 of 4 0.23Down
Crop31 00 of 4 0.30Down
Midgut65 34 of 4 0.50Down
Tubule56 43 of 4 0.50Down
Hindgut28 21 of 4 0.20Down
Heart34 74 of 4 0.28Down
Fat body22 31 of 4 0.19Down
Ovary246 44 of 4 2.00Up
Testis59 14 of 4 0.50Down
Male accessory glands23 22 of 4 0.20Down
Virgin spermatheca28 02 of 4 0.23Down
Mated spermatheca23 20 of 4 0.19Down
Adult carcass27 32 of 4 0.20Down
Larval CNS134 124 of 4 1.09None
Larval Salivary gland53 30 of 4 0.44Down
Larval midgut67 93 of 4 0.55Down
Larval tubule119 64 of 4 1.00None
Larval hindgut93 54 of 4 0.76Down
Larval fat body52 54 of 4 0.40Down
Larval trachea158 114 of 4 1.29Up
Larval carcass138 204 of 4 1.13None
S2 cells (growing)279 54 of 4 2.27Up
Whole fly122 74 of 4



/// Nedd2-like caspase (CG8090 /// Nc):

Annotation Number : CG8090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033995
Gbrowse : chr2R:11086811-11088682 (-) // 100.0 //
Probeset : 1627473_at
Accessions : protein= NP_001163158; /// NP_611016;, nucleotide= NM_001169687; /// NM_137172;
FlyMine data for FBgn0033995.
TRiP has 1 RNAi stocks for FBgn0033995 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033995 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain208 54 of 4 1.80Up
Head98 64 of 4 0.80None
Eye74 64 of 4 0.64Down
Thoracicoabdominal ganglion322 84 of 4 2.80Up
Salivary gland240 154 of 4 2.07Up
Crop90 44 of 4 0.80Down
Midgut107 64 of 4 0.90None
Tubule117 54 of 4 1.00None
Hindgut98 44 of 4 0.80Down
Heart114 14 of 4 0.98None
Fat body101 54 of 4 0.87Down
Ovary208 24 of 4 1.80Up
Testis92 14 of 4 0.80Down
Male accessory glands314 184 of 4 2.70Up
Virgin spermatheca143 64 of 4 1.23Up
Mated spermatheca173 74 of 4 1.49Up
Adult carcass91 44 of 4 0.80Down
Larval CNS141 64 of 4 1.21Up
Larval Salivary gland394 144 of 4 3.39Up
Larval midgut123 54 of 4 1.06None
Larval tubule226 64 of 4 2.00Up
Larval hindgut125 34 of 4 1.08None
Larval fat body171 84 of 4 1.50Up
Larval trachea121 124 of 4 1.04None
Larval carcass114 94 of 4 0.99None
S2 cells (growing)169 24 of 4 1.46Up
Whole fly116 34 of 4

Looking for FBgn0026404. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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