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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0026411 through 18771 annotations produced 2 hits


Lim kinase (Lim1):

Annotation Number : CT30152
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026411
Gbrowse : chrX:8699236-8699979 (-) // 100.0 //
Probeset : 1633262_s_at
Accessions : protein= NP_572505;, nucleotide= NM_132277;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007479 // leg disc proximal/distal pattern formation // infer
FlyMine data for FBgn0026411.
TRiP has 1 RNAi stocks for FBgn0026411 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026411 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 ± 74 of 424.10Up
Head8 ± 10 of 4 2.40Up
Eye2 ± 10 of 4 0.55None
Thoracicoabdominal ganglion51 ± 74 of 414.20Up
Salivary gland8 ± 50 of 4 2.24None
Crop4 ± 10 of 4 1.10None
Midgut3 ± 10 of 4 1.00None
Tubule2 ± 00 of 4 0.70Down
Hindgut1 ± 00 of 4 0.50None
Heart1 ± 10 of 4 0.45None
Fat body5 ± 30 of 4 1.62None
Ovary0 ± 00 of 4 0.20Down
Testis18 ± 34 of 4 4.90Up
Male accessory glands3 ± 10 of 4 1.00None
Virgin spermatheca15 ± 01 of 4 4.10Up
Mated spermatheca17 ± 32 of 4 4.86Up
Adult carcass2 ± 00 of 4 0.80None
Larval CNS58 ± 94 of 415.98Up
Larval Salivary gland3 ± 10 of 4 0.91None
Larval midgut1 ± 00 of 4 0.41None
Larval tubule2 ± 10 of 4 0.80None
Larval hindgut3 ± 00 of 4 0.99None
Larval fat body2 ± 10 of 4 0.70None
Larval trachea4 ± 20 of 4 1.25None
Larval carcass2 ± 10 of 4 0.75None
S2 cells (growing)2 ± 10 of 4 0.71None
Whole fly3 ± 00 of 4


Lim kinase (Lim1):

Annotation Number : CG11354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026411
Gbrowse : chrX:8651267-8699808 (-) // 100.0 //
Probeset : 1629733_at
Accessions : protein= NP_572505;, nucleotide= NM_132277;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0006355 // regulation of transcription
Interpro : DNA-dependent // inferred from electronic annotation /// 0007479 // leg disc proximal/distal pattern formation // infer
FlyMine data for FBgn0026411.
Homophila reports that CG11354 is a close match (3e-13) to human gene FHL1;SLIM1;XMPMA (NP_001440), a gene associated with Myopathy, reducing body, X-linked, severe early-onset, 300717 (3), Myopathy, reducing body, X-linked, childhood-onset, 300718 (3);Myopathy, X-linked, with postural muscle atrophy, 300696 (3);Scapuloperoneal myopathy, X-linked dominant, 300695 (3).
BioGrid reports that CG11354 interacts with CG12952 CG3924 CG5516 CG11525 CG11696 CG12736 CG1391 CG15224 CG15436 CG15631 CG1783 CG18806 CG2129 CG31108 CG32530 CG3294 CG4466 CG5362 CG7470 CG9277 CG3935 CG3935 .
TRiP has 1 RNAi stocks for FBgn0026411 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026411 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain358 ± 244 of 420.00Up
Head79 ± 54 of 4 4.40Up
Eye8 ± 11 of 4 0.48Down
Thoracicoabdominal ganglion334 ± 154 of 418.70Up
Salivary gland30 ± 23 of 4 1.69Up
Crop11 ± 02 of 4 0.70Down
Midgut0 ± 00 of 4 0.00Down
Tubule4 ± 00 of 4 0.30Down
Hindgut4 ± 10 of 4 0.20Down
Heart0 ± 00 of 4 0.03Down
Fat body18 ± 34 of 4 1.02None
Ovary2 ± 01 of 4 0.10Down
Testis93 ± 64 of 4 5.20Up
Male accessory glands7 ± 21 of 4 0.40Down
Virgin spermatheca199 ± 214 of 411.14Up
Mated spermatheca325 ± 184 of 418.17Up
Adult carcass21 ± 31 of 4 1.20None
Larval CNS327 ± 174 of 418.28Up
Larval Salivary gland5 ± 21 of 4 0.30Down
Larval midgut3 ± 10 of 4 0.18Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut9 ± 04 of 4 0.54Down
Larval fat body3 ± 20 of 4 0.20Down
Larval trachea9 ± 02 of 4 0.53Down
Larval carcass14 ± 14 of 4 0.83None
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly17 ± 14 of 4

Looking for FBgn0026411. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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