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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026439 through 18771 annotations produced 1 hits



sodium-dependent glutamate transporter (Eaat1):

Annotation Number : CG3747
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026439
Gbrowse : chr2L:9333567-9341625 (+) // 100.0 //
Probeset : 1641104_s_at
Accessions : protein= NP_477428; /// NP_723454; /// NP_723455;, nucleotide= NM_058080; /// NM_164853; /// NM_164854;
Pathway : 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // inferred from sequence or str
Interpro : 0005313 // L-glutamate transmembrane transporter activity // inferred from direct assay /// 0015183 // L-aspartate trans
FlyMine data for FBgn0026439.
Homophila reports that CG3747 is a close match (4e-88) to human gene EA6;EAAT1;SLC1A3 (NP_004163), a gene associated with Episodic ataxia, type 6 (3).
VDRC has 1 RNAi stocks for FBgn0026439 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1393 624 of 4 5.70Up
Head1010 584 of 4 4.10Up
Eye212 94 of 4 0.86None
Thoracicoabdominal ganglion1193 414 of 4 4.90Up
Salivary gland88 44 of 4 0.36Down
Crop863 274 of 4 3.50Up
Midgut213 174 of 4 0.90None
Tubule171 134 of 4 0.70Down
Hindgut302 74 of 4 1.20Up
Heart368 284 of 4 1.50Up
Fat body1194 394 of 4 4.86Up
Ovary8 14 of 4 0.00Down
Testis6 14 of 4 0.00Down
Male accessory glands7 01 of 4 0.00Down
Virgin spermatheca434 274 of 4 1.77Up
Mated spermatheca410 224 of 4 1.67Up
Adult carcass739 314 of 4 3.00Up
Larval CNS780 774 of 4 3.17Up
Larval Salivary gland15 24 of 4 0.06Down
Larval midgut138 174 of 4 0.56Down
Larval tubule7 22 of 4 0.00Down
Larval hindgut17 34 of 4 0.07Down
Larval fat body393 254 of 4 1.60Up
Larval trachea8 43 of 4 0.03Down
Larval carcass12 23 of 4 0.05Down
S2 cells (growing)13 14 of 4 0.06Down
Whole fly245 174 of 4

Looking for FBgn0026439. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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