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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026441 through 18771 annotations produced 1 hits



ENL/AF9-related (ear):

Annotation Number : CG4913
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026441
Gbrowse : chr3R:11146483-11150197 (+) // 100.0 //
Probeset : 1637503_at
Accessions : protein= NP_651979;, nucleotide= NM_143722;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II pro
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005669 // transcription factor TFIID complex // inferred
FlyMine data for FBgn0026441.
TRiP has 2 RNAi stocks for FBgn0026441 available for purchase.
VDRC has 3 RNAi stocks for FBgn0026441 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain72 24 of 4 1.50Up
Head31 34 of 4 0.70Down
Eye18 24 of 4 0.40Down
Thoracicoabdominal ganglion42 54 of 4 0.90None
Salivary gland39 43 of 4 0.83None
Crop31 14 of 4 0.70Down
Midgut27 24 of 4 0.60Down
Tubule16 03 of 4 0.30Down
Hindgut22 24 of 4 0.50Down
Heart20 14 of 4 0.43Down
Fat body38 24 of 4 0.80None
Ovary90 34 of 4 1.90Up
Testis97 34 of 4 2.00Up
Male accessory glands35 34 of 4 0.70None
Virgin spermatheca19 23 of 4 0.40Down
Mated spermatheca21 23 of 4 0.46Down
Adult carcass29 43 of 4 0.60Down
Larval CNS85 94 of 4 1.80Up
Larval Salivary gland56 34 of 4 1.18None
Larval midgut24 14 of 4 0.52Down
Larval tubule24 14 of 4 0.50Down
Larval hindgut32 04 of 4 0.69Down
Larval fat body42 44 of 4 0.90None
Larval trachea32 24 of 4 0.68Down
Larval carcass35 24 of 4 0.75None
S2 cells (growing)97 54 of 4 2.04Up
Whole fly47 44 of 4

Looking for FBgn0026441. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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