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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026563 through 18771 annotations produced 1 hits



(CG1979):

Annotation Number : CG1979
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026563
Gbrowse : chr3R:2880287-2884393 (+) // 100.0 //
Probeset : 1640714_at
Accessions : protein= NP_649685;, nucleotide= NM_141428;
FlyMine data for FBgn0026563.
BDGP gene expression has embryonic in situ data for BG:DS00464.1: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0026563 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.00Down
Head17 ± 43 of 4 0.10Down
Eye7 ± 12 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 00 of 4 0.00Down
Salivary gland9 ± 30 of 4 0.06Down
Crop2 ± 00 of 4 0.00Down
Midgut8 ± 20 of 4 0.10Down
Tubule29 ± 73 of 4 0.20Down
Hindgut19 ± 14 of 4 0.10Down
Heart43 ± 54 of 4 0.28Down
Fat body65 ± 134 of 4 0.42Down
Ovary1 ± 00 of 4 0.00Down
Testis1667 ± 324 of 410.80Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca280 ± 424 of 4 1.81None
Mated spermatheca61 ± 94 of 4 0.39Down
Adult carcass32 ± 34 of 4 0.20Down
Larval CNS2 ± 20 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut12 ± 23 of 4 0.08Down
Larval tubule6 ± 11 of 4 0.00Down
Larval hindgut13 ± 24 of 4 0.09Down
Larval fat body134 ± 774 of 4 0.90None
Larval trachea5 ± 81 of 4 0.03Down
Larval carcass2 ± 00 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly155 ± 134 of 4

Looking for FBgn0026563. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime