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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026577 through 18771 annotations produced 1 hits



HBXAP ortholog (CG8677):

Annotation Number : CG8677
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026577
Gbrowse : chr2L:21221335-21234035 (+) // 100.0 //
Probeset : 1630856_at
Accessions : protein= NP_610101;, nucleotide= NM_136257;
Pathway : DNA-dependent // inferred from sequence or structural similarity /// 0070868 // heterochromatin organization involved i
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
FlyMine data for FBgn0026577.
BDGP gene expression has embryonic in situ data for BEST:LD14959: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0026577 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.20None
Head5 ± 21 of 4 1.60None
Eye7 ± 01 of 4 2.14Up
Thoracicoabdominal ganglion2 ± 10 of 4 0.80None
Salivary gland5 ± 20 of 4 1.60None
Crop3 ± 10 of 4 1.00None
Midgut3 ± 10 of 4 1.10None
Tubule5 ± 00 of 4 1.60Up
Hindgut3 ± 01 of 4 1.10None
Heart3 ± 10 of 4 1.09None
Fat body4 ± 20 of 4 1.25None
Ovary1 ± 00 of 4 0.30None
Testis12 ± 14 of 4 3.30Up
Male accessory glands3 ± 10 of 4 0.90None
Virgin spermatheca12 ± 24 of 4 3.57Up
Mated spermatheca14 ± 22 of 4 4.10Up
Adult carcass1 ± 00 of 4 0.50None
Larval CNS4 ± 30 of 4 1.14None
Larval Salivary gland6 ± 11 of 4 1.83None
Larval midgut1 ± 10 of 4 0.54None
Larval tubule2 ± 00 of 4 0.50None
Larval hindgut4 ± 00 of 4 1.33None
Larval fat body4 ± 20 of 4 1.40None
Larval trachea1 ± 10 of 4 0.33None
Larval carcass2 ± 00 of 4 0.78None
S2 cells (growing)3 ± 00 of 4 0.86None
Whole fly3 ± 10 of 4

Looking for FBgn0026577. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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