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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0026592 through 18771 annotations produced 1 hits

CG1079 (Fie):

Annotation Number : CG1079
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026592
Gbrowse : chr3L:3892573-3894833 (+) // 100.0 //
Probeset : 1632226_at
Accessions : protein= NP_573393;, nucleotide= NM_133165;
FlyMine data for FBgn0026592.
BDGP gene expression has embryonic in situ data for BEST:HL04053: 8 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0026592 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1516 354 of 4 9.20Up
Head1178 844 of 4 7.10Up
Eye4661 2634 of 428.17Up
Thoracicoabdominal ganglion2542 584 of 415.40Up
Salivary gland13 12 of 4 0.08Down
Crop168 44 of 4 1.00None
Midgut21 14 of 4 0.10Down
Tubule8 01 of 4 0.10Down
Hindgut69 64 of 4 0.40Down
Heart1120 344 of 4 6.77Up
Fat body30 34 of 4 0.19Down
Ovary2 00 of 4 0.00Down
Testis70 14 of 4 0.40Down
Male accessory glands7 20 of 4 0.00Down
Virgin spermatheca15 03 of 4 0.10Down
Mated spermatheca15 34 of 4 0.09Down
Adult carcass95 64 of 4 0.60Down
Larval CNS166 144 of 4 1.01None
Larval Salivary gland7 13 of 4 0.05Down
Larval midgut5 10 of 4 0.04Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut5 01 of 4 0.04Down
Larval fat body15 41 of 4 0.10Down
Larval trachea67 1242 of 4 0.41None
Larval carcass11 12 of 4 0.07Down
S2 cells (growing)21 24 of 4 0.13Down
Whole fly165 154 of 4

Looking for FBgn0026592. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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