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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026593 through 18771 annotations produced 1 hits



(CG5707):

Annotation Number : CG5707
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026593
Gbrowse : chr3L:2189157-2192180 (-) // 100.0 //
Probeset : 1634630_at
Accessions : protein= NP_652065;, nucleotide= NM_143808;
FlyMine data for FBgn0026593.
BDGP gene expression has embryonic in situ data for BEST:HL03644: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0026593 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 04 of 4 0.20Down
Head313 ± 444 of 4 2.40Up
Eye129 ± 194 of 4 1.00None
Thoracicoabdominal ganglion28 ± 24 of 4 0.20Down
Salivary gland148 ± 164 of 4 1.15None
Crop124 ± 74 of 4 1.00None
Midgut219 ± 104 of 4 1.70Up
Tubule267 ± 284 of 4 2.10Up
Hindgut88 ± 54 of 4 0.70None
Heart529 ± 204 of 4 4.10Up
Fat body1034 ± 1504 of 4 8.02Up
Ovary111 ± 34 of 4 0.90None
Testis1 ± 00 of 4 0.00Down
Male accessory glands13 ± 40 of 4 0.10Down
Virgin spermatheca360 ± 354 of 4 2.80Up
Mated spermatheca706 ± 434 of 4 5.48Up
Adult carcass539 ± 224 of 4 4.20Up
Larval CNS21 ± 43 of 4 0.16Down
Larval Salivary gland11 ± 20 of 4 0.09Down
Larval midgut172 ± 144 of 4 1.34None
Larval tubule4 ± 10 of 4 0.00Down
Larval hindgut29 ± 53 of 4 0.23Down
Larval fat body34 ± 52 of 4 0.30Down
Larval trachea15 ± 44 of 4 0.12Down
Larval carcass14 ± 20 of 4 0.11Down
S2 cells (growing)49 ± 24 of 4 0.39Down
Whole fly129 ± 144 of 4

Looking for FBgn0026593. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime