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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026597 through 18771 annotations produced 1 hits



D-axin (Axn):

Annotation Number : CG7926
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026597
Gbrowse : chr3R:25848565-25861035 (+) // 100.0 //
Probeset : 1632134_s_at
Accessions : protein= NP_001138126; /// NP_001163773; /// NP_733336; /// NP_733337; /// NP_733338;, nucleotide= NM_001144654; /// NM_001170302; /// NM_170457; /// NM_170458; /// NM_170459;
Pathway : engulfment // inferred from mutant phenotype /// 0007275 // multicellular organismal development // inferred from elect
Interpro : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay ///
FlyMine data for FBgn0026597.
Homophila reports that CG7926 is a close match (1e-13) to human gene AXIN;AXIN1 (NP_851393), a gene associated with Caudal duplication anomaly, 607864 (3);Hepatocellular carcinoma, somatic, 114550 (3).
BioGrid reports that CG7926 interacts with CG11579 CG18361 CG18361 CG2621 CG4889 CG4889 CG1916 CG17964 CG1451 CG6193 CG11518 .
TRiP has 1 RNAi stocks for FBgn0026597 available for purchase.
VDRC has 1 RNAi stocks for FBgn0026597 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain249 ± 84 of 4 2.30Up
Head78 ± 14 of 4 0.70Down
Eye102 ± 54 of 4 0.97None
Thoracicoabdominal ganglion173 ± 24 of 4 1.60Up
Salivary gland90 ± 24 of 4 0.85Down
Crop86 ± 24 of 4 0.80Down
Midgut64 ± 34 of 4 0.60Down
Tubule69 ± 14 of 4 0.70Down
Hindgut58 ± 34 of 4 0.60Down
Heart60 ± 34 of 4 0.56Down
Fat body65 ± 44 of 4 0.61Down
Ovary308 ± 74 of 4 2.90Up
Testis44 ± 14 of 4 0.40Down
Male accessory glands95 ± 64 of 4 0.90None
Virgin spermatheca77 ± 44 of 4 0.72Down
Mated spermatheca72 ± 24 of 4 0.68Down
Adult carcass54 ± 34 of 4 0.50Down
Larval CNS383 ± 444 of 4 3.60Up
Larval Salivary gland95 ± 34 of 4 0.90Down
Larval midgut77 ± 44 of 4 0.72Down
Larval tubule74 ± 44 of 4 0.70Down
Larval hindgut100 ± 44 of 4 0.94None
Larval fat body51 ± 34 of 4 0.50Down
Larval trachea144 ± 134 of 4 1.36Up
Larval carcass108 ± 34 of 4 1.02None
S2 cells (growing)198 ± 24 of 4 1.87Up
Whole fly106 ± 24 of 4

Looking for FBgn0026597. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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