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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0026602 through 18771 annotations produced 1 hits

Ady43A (Ady43A):

Annotation Number : CG1851
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026602
Gbrowse : chr2R:3130564-3133263 (-) // 100.0 //
Probeset : 1641062_at
Accessions : protein= NP_651995;, nucleotide= NM_143738;
Interpro : 0004001 // adenosine kinase activity // inferred from sequence or structural similarity /// 0004001 // adenosine kinase
FlyMine data for FBgn0026602.
BDGP gene expression has embryonic in situ data for Ady43A: 4 pix of staining in 1 body parts.
BioGrid reports that CG1851 interacts with CG1867 CG7440 CG9699 CG3953 CG6332 CG8635 .
TRiP has 1 RNAi stocks for FBgn0026602 available for purchase.
VDRC has 1 RNAi stocks for FBgn0026602 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain435 174 of 4 4.20Up
Head183 184 of 4 1.80Up
Eye41 124 of 4 0.41Down
Thoracicoabdominal ganglion500 344 of 4 4.80Up
Salivary gland94 94 of 4 0.92None
Crop103 64 of 4 1.00None
Midgut59 34 of 4 0.60Down
Tubule1477 854 of 414.30Up
Hindgut113 84 of 4 1.10None
Heart27 34 of 4 0.26Down
Fat body39 84 of 4 0.39Down
Ovary72 64 of 4 0.70Down
Testis12 02 of 4 0.10Down
Male accessory glands35 44 of 4 0.30Down
Virgin spermatheca50 14 of 4 0.49Down
Mated spermatheca43 34 of 4 0.42Down
Adult carcass118 124 of 4 1.10None
Larval CNS79 294 of 4 0.77None
Larval Salivary gland51 54 of 4 0.50Down
Larval midgut31 34 of 4 0.31Down
Larval tubule2521 984 of 424.40Up
Larval hindgut29 14 of 4 0.29Down
Larval fat body71 134 of 4 0.70None
Larval trachea39 74 of 4 0.38Down
Larval carcass35 14 of 4 0.35Down
S2 cells (growing)22 14 of 4 0.22Down
Whole fly103 84 of 4

Looking for FBgn0026602. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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