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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026713 through 18771 annotations produced 1 hits



lethal (1) G0007 (l(1)G0007):

Annotation Number : CG32604
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026713
Gbrowse : chrX:14095404-14118761 (+) // 100.0 //
Probeset : 1623333_a_at
Accessions : protein= NP_572947; /// NP_727764;, nucleotide= NM_132719; /// NM_167396;
Pathway : via spliceosome // inferred from mutant phenotype /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0002121 // inter-male aggressive behavior // inf
FlyMine data for FBgn0026713.
VDRC has 5 RNAi stocks for FBgn0026713 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain68 24 of 4 1.20Up
Head40 34 of 4 0.70Down
Eye56 34 of 4 1.03None
Thoracicoabdominal ganglion58 14 of 4 1.10None
Salivary gland71 54 of 4 1.30Up
Crop75 24 of 4 1.40Up
Midgut44 14 of 4 0.80None
Tubule60 84 of 4 1.10None
Hindgut56 04 of 4 1.00None
Heart41 14 of 4 0.76Down
Fat body40 64 of 4 0.73Down
Ovary72 14 of 4 1.30Up
Testis27 14 of 4 0.50Down
Male accessory glands113 14 of 4 2.10Up
Virgin spermatheca45 34 of 4 0.82None
Mated spermatheca50 54 of 4 0.91None
Adult carcass55 34 of 4 1.00None
Larval CNS109 94 of 4 1.98Up
Larval Salivary gland165 114 of 4 3.00Up
Larval midgut72 34 of 4 1.31Up
Larval tubule52 14 of 4 1.00None
Larval hindgut77 74 of 4 1.40Up
Larval fat body50 74 of 4 0.90None
Larval trachea112 54 of 4 2.04Up
Larval carcass90 14 of 4 1.63Up
S2 cells (growing)203 84 of 4 3.70Up
Whole fly55 34 of 4

Looking for FBgn0026713. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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