FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0026718 through 18771 annotations produced 1 hits

fu12 (fu12):

Annotation Number : CG17608
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026718
Gbrowse : chr2L:8449682-8463990 (-) // 100.0 //
Probeset : 1625344_at
Accessions : protein= NP_001162912; /// NP_609231; /// NP_723398;, nucleotide= NM_001169441; /// NM_135387; /// NM_164823;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0003841 // 1-acylglycerol-3-phosphate O-acyltransferase activity // inferred from sequence or structural similarity ///
FlyMine data for FBgn0026718.
BDGP gene expression has embryonic in situ data for fu12: 10 pix of staining in 4 body parts.
Homophila reports that CG17608 is a close match (2e-21) to human gene AGPAT2;BSCL;BSCL1;LPAAB (NP_006403), a gene associated with Lipodystrophy, congenital generalized, type 1, 608594 (3).
VDRC has 3 RNAi stocks for FBgn0026718 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	101 ± 3	4 of 4	0.50	Down
Head	173 ± 13	4 of 4	0.90	None
Eye	99 ± 1	4 of 4	0.51	Down
Thoracicoabdominal ganglion	131 ± 6	4 of 4	0.70	Down
Salivary gland	33 ± 1	0 of 4	0.17	Down
Crop	92 ± 3	4 of 4	0.50	Down
Midgut	542 ± 8	4 of 4	2.80	Up
Tubule	416 ± 35	4 of 4	2.10	Up
Hindgut	139 ± 3	4 of 4	0.70	Down
Heart	61 ± 12	4 of 4	0.32	Down
Fat body	254 ± 45	4 of 4	1.31	None
Ovary	262 ± 7	4 of 4	1.40	Up
Testis	511 ± 29	4 of 4	2.60	Up
Male accessory glands	12 ± 4	2 of 4	0.10	Down
Virgin spermatheca	542 ± 55	4 of 4	2.79	Up
Mated spermatheca	309 ± 24	4 of 4	1.59	Up
Adult carcass	145 ± 5	4 of 4	0.70	Down
Larval CNS	122 ± 10	4 of 4	0.63	Down
Larval Salivary gland	12 ± 2	0 of 4	0.06	Down
Larval midgut	256 ± 56	4 of 4	1.32	None
Larval tubule	49 ± 3	4 of 4	0.30	Down
Larval hindgut	54 ± 4	4 of 4	0.28	Down
Larval fat body	94 ± 45	4 of 4	0.50	None
Larval trachea	37 ± 15	4 of 4	0.19	Down
Larval carcass	11 ± 2	0 of 4	0.06	Down
S2 cells (growing)	395 ± 3	4 of 4	2.03	Up
Whole fly	194 ± 14	4 of 4

Looking for FBgn0026718. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720