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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026721 through 18771 annotations produced 1 hits



fat-spondin (fat-spondin):

Annotation Number : CG6953
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026721
Gbrowse : chr2R:12941533-12946810 (+) // 100.0 //
Probeset : 1629572_a_at
Accessions : protein= NP_477435; /// NP_725647;, nucleotide= NM_058087; /// NM_166213;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation
FlyMine data for FBgn0026721.
BDGP gene expression has embryonic in situ data for fat-spondin: 25 pix of staining in 6 body parts.
Homophila reports that CG6953 is a close match (7e-17) to human gene ARMD1;FBLN6;FIBL6;HMCN1 (NP_114141), a gene associated with {Macular degeneration, age-related, 1}, 603075 (3).
VDRC has 2 RNAi stocks for FBgn0026721 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain201 ± 64 of 4 1.40Up
Head782 ± 754 of 4 5.50Up
Eye577 ± 594 of 4 4.05Up
Thoracicoabdominal ganglion420 ± 84 of 4 2.90Up
Salivary gland25 ± 40 of 4 0.18Down
Crop20 ± 43 of 4 0.10Down
Midgut4 ± 10 of 4 0.00Down
Tubule31 ± 33 of 4 0.20Down
Hindgut79 ± 44 of 4 0.60Down
Heart1341 ± 794 of 4 9.41Up
Fat body1749 ± 1774 of 412.27Up
Ovary2 ± 10 of 4 0.00Down
Testis27 ± 24 of 4 0.20Down
Male accessory glands11 ± 30 of 4 0.10Down
Virgin spermatheca2735 ± 1244 of 419.19Up
Mated spermatheca2179 ± 1344 of 415.29Up
Adult carcass1047 ± 614 of 4 7.30Up
Larval CNS29 ± 44 of 4 0.21Down
Larval Salivary gland30 ± 14 of 4 0.21Down
Larval midgut13 ± 20 of 4 0.09Down
Larval tubule12 ± 20 of 4 0.10Down
Larval hindgut46 ± 54 of 4 0.33Down
Larval fat body784 ± 324 of 4 5.50Up
Larval trachea57 ± 134 of 4 0.40Down
Larval carcass97 ± 54 of 4 0.69Down
S2 cells (growing)1340 ± 284 of 4 9.40Up
Whole fly142 ± 124 of 4

Looking for FBgn0026721. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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