FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0026741 through 18771 annotations produced 1 hits

mitochondrial ribosomal protein L18 (mRpL18):

Annotation Number : CG12373
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026741
Gbrowse : chr2R:8643903-8644678 (+) // 100.0 //
Probeset : 1623811_at
Accessions : protein= NP_610818;, nucleotide= NM_136974;
Pathway : 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0026741.
BDGP gene expression has embryonic in situ data for mRpL18: 2 pix of staining in 1 body parts.
BioGrid reports that CG12373 interacts with CG9610 .
VDRC has 2 RNAi stocks for FBgn0026741 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	199 ± 6	4 of 4	1.00	None
Head	150 ± 5	4 of 4	0.70	None
Eye	89 ± 3	4 of 4	0.44	Down
Thoracicoabdominal ganglion	192 ± 7	4 of 4	0.90	None
Salivary gland	76 ± 3	4 of 4	0.37	Down
Crop	131 ± 9	4 of 4	0.60	None
Midgut	130 ± 5	4 of 4	0.60	None
Tubule	71 ± 4	4 of 4	0.30	Down
Hindgut	240 ± 7	4 of 4	1.20	None
Heart	108 ± 4	4 of 4	0.53	Down
Fat body	141 ± 33	4 of 4	0.68	None
Ovary	271 ± 9	4 of 4	1.30	None
Testis	67 ± 5	4 of 4	0.30	Down
Male accessory glands	127 ± 2	4 of 4	0.60	None
Virgin spermatheca	54 ± 1	4 of 4	0.27	Down
Mated spermatheca	64 ± 7	4 of 4	0.31	Down
Adult carcass	142 ± 13	4 of 4	0.70	None
Larval CNS	177 ± 12	4 of 4	0.86	None
Larval Salivary gland	159 ± 7	4 of 4	0.77	None
Larval midgut	72 ± 9	4 of 4	0.35	Down
Larval tubule	91 ± 4	4 of 4	0.40	Down
Larval hindgut	148 ± 12	4 of 4	0.72	None
Larval fat body	48 ± 2	4 of 4	0.20	Down
Larval trachea	166 ± 14	4 of 4	0.81	None
Larval carcass	126 ± 13	4 of 4	0.61	None
S2 cells (growing)	138 ± 3	4 of 4	0.67	None
Whole fly	205 ± 28	4 of 4

Looking for FBgn0026741. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720