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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026777 through 18771 annotations produced 1 hits



Rad23 (Rad23):

Annotation Number : CG1836
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026777
Gbrowse : chr4:328722-330934 (+) // 100.0 //
Probeset : 1625068_a_at
Accessions : protein= NP_651918; /// NP_726561;, nucleotide= NM_143661; /// NM_166752;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003684 // damaged DNA binding // inferred from sequence or structural similarity /// 0003684 // damaged DNA binding //
FlyMine data for FBgn0026777.
BDGP gene expression has embryonic in situ data for Rad23: 12 pix of staining in 3 body parts.
BioGrid reports that CG1836 interacts with CG3492 CG18582 CG2926 CG30011 CG31482 CG32016 CG4641 CG5935 CG6156 CG7757 CG7865 CG9206 .
VDRC has 3 RNAi stocks for FBgn0026777 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain482 ± 94 of 4 0.60Down
Head387 ± 84 of 4 0.50Down
Eye341 ± 64 of 4 0.46Down
Thoracicoabdominal ganglion455 ± 104 of 4 0.60Down
Salivary gland523 ± 154 of 4 0.70Down
Crop623 ± 214 of 4 0.80Down
Midgut543 ± 214 of 4 0.70Down
Tubule669 ± 334 of 4 0.90Down
Hindgut441 ± 94 of 4 0.60Down
Heart556 ± 244 of 4 0.75Down
Fat body520 ± 94 of 4 0.70Down
Ovary1251 ± 94 of 4 1.70Up
Testis377 ± 54 of 4 0.50Down
Male accessory glands908 ± 44 of 4 1.20Up
Virgin spermatheca329 ± 74 of 4 0.44Down
Mated spermatheca389 ± 154 of 4 0.52Down
Adult carcass472 ± 174 of 4 0.60Down
Larval CNS574 ± 104 of 4 0.77Down
Larval Salivary gland943 ± 214 of 4 1.27Up
Larval midgut628 ± 224 of 4 0.84Down
Larval tubule1100 ± 134 of 4 1.50Up
Larval hindgut653 ± 344 of 4 0.88None
Larval fat body702 ± 284 of 4 0.90None
Larval trachea574 ± 364 of 4 0.77Down
Larval carcass1035 ± 584 of 4 1.39Up
S2 cells (growing)404 ± 114 of 4 0.54Down
Whole fly743 ± 334 of 4

Looking for FBgn0026777. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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