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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026778 through 18771 annotations produced 1 hits



/// Rad1 (CG34314 /// Rad1):

Annotation Number : CG3240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026778 /// FBgn0085343
Gbrowse : chr2L:2573423-2575051 (-) // 100.0 //
Probeset : 1632949_at
Accessions : protein= NP_001097061; /// NP_477440;, nucleotide= NM_001103591; /// NM_058092;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003684 // damaged DNA binding // inferred from sequence or structural similarity /// 0003684 // damaged DNA binding //
FlyMine data for FBgn0026778 /// FBgn0085343.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 ± 34 of 4 0.60Down
Head27 ± 14 of 4 0.30Down
Eye35 ± 24 of 4 0.43Down
Thoracicoabdominal ganglion73 ± 44 of 4 0.90None
Salivary gland25 ± 52 of 4 0.31Down
Crop15 ± 23 of 4 0.20Down
Midgut27 ± 14 of 4 0.30Down
Tubule12 ± 12 of 4 0.20Down
Hindgut9 ± 12 of 4 0.10Down
Heart16 ± 24 of 4 0.20Down
Fat body24 ± 34 of 4 0.30Down
Ovary180 ± 14 of 4 2.20Up
Testis21 ± 14 of 4 0.30Down
Male accessory glands8 ± 20 of 4 0.10Down
Virgin spermatheca23 ± 04 of 4 0.29Down
Mated spermatheca26 ± 34 of 4 0.33Down
Adult carcass14 ± 11 of 4 0.20Down
Larval CNS87 ± 54 of 4 1.08None
Larval Salivary gland23 ± 34 of 4 0.29Down
Larval midgut44 ± 24 of 4 0.55Down
Larval tubule24 ± 34 of 4 0.30Down
Larval hindgut19 ± 14 of 4 0.24Down
Larval fat body22 ± 34 of 4 0.30Down
Larval trachea33 ± 24 of 4 0.41Down
Larval carcass23 ± 14 of 4 0.29Down
S2 cells (growing)44 ± 24 of 4 0.55Down
Whole fly81 ± 14 of 4

Looking for FBgn0026778. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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