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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026872 through 18771 annotations produced 2 hits



(CG14777):

Annotation Number : CG14777
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026872
Gbrowse : chrX:1360785-1362725 (+) // 100.0 //
Probeset : 1635661_at
Accessions : protein= NP_001162634; /// NP_569917;, nucleotide= NM_001169163; /// NM_130561;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0026872.
BDGP gene expression has embryonic in situ data for EG:80H7.10: 8 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0026872 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain525 ± 164 of 4 2.80Up
Head435 ± 244 of 4 2.30Up
Eye749 ± 344 of 4 4.00Up
Thoracicoabdominal ganglion638 ± 124 of 4 3.40Up
Salivary gland1213 ± 804 of 4 6.48Up
Crop337 ± 134 of 4 1.80Up
Midgut284 ± 84 of 4 1.50Up
Tubule1941 ± 2254 of 410.40Up
Hindgut574 ± 44 of 4 3.10Up
Heart542 ± 214 of 4 2.90Up
Fat body457 ± 224 of 4 2.44Up
Ovary37 ± 44 of 4 0.20Down
Testis14 ± 03 of 4 0.10Down
Male accessory glands201 ± 94 of 4 1.10None
Virgin spermatheca442 ± 104 of 4 2.36Up
Mated spermatheca565 ± 434 of 4 3.02Up
Adult carcass516 ± 254 of 4 2.80Up
Larval CNS93 ± 84 of 4 0.50Down
Larval Salivary gland130 ± 74 of 4 0.70Down
Larval midgut393 ± 404 of 4 2.10Up
Larval tubule249 ± 114 of 4 1.30Up
Larval hindgut346 ± 294 of 4 1.85Up
Larval fat body63 ± 14 of 4 0.30Down
Larval trachea134 ± 94 of 4 0.72Down
Larval carcass128 ± 64 of 4 0.68Down
S2 cells (growing)247 ± 54 of 4 1.32Up
Whole fly187 ± 114 of 4



/// (CG14777 /// CG14778):

Annotation Number : CG14778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029580
Gbrowse : chrX:1363850-1364593 (+) // 100.0 //
Probeset : 1641587_at
Accessions : protein= NP_001162634; /// NP_569917; /// NP_569918;, nucleotide= NM_001169163; /// NM_130561; /// NM_130562;
Pathway : 0005778 // peroxisomal membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
FlyMine data for FBgn0029580.
VDRC has 2 RNAi stocks for FBgn0029580 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 14 of 4 0.50Down
Head64 ± 84 of 4 1.50None
Eye14 ± 23 of 4 0.33Down
Thoracicoabdominal ganglion30 ± 04 of 4 0.70Down
Salivary gland28 ± 23 of 4 0.66Down
Crop91 ± 64 of 4 2.10Up
Midgut13 ± 10 of 4 0.30Down
Tubule231 ± 514 of 4 5.30Up
Hindgut30 ± 14 of 4 0.70Down
Heart69 ± 54 of 4 1.59Up
Fat body30 ± 34 of 4 0.69Down
Ovary7 ± 11 of 4 0.20Down
Testis10 ± 11 of 4 0.20Down
Male accessory glands26 ± 31 of 4 0.60Down
Virgin spermatheca27 ± 14 of 4 0.63Down
Mated spermatheca29 ± 34 of 4 0.68Down
Adult carcass177 ± 134 of 4 4.10Up
Larval CNS5 ± 11 of 4 0.12Down
Larval Salivary gland8 ± 10 of 4 0.20Down
Larval midgut16 ± 21 of 4 0.37Down
Larval tubule22 ± 24 of 4 0.50Down
Larval hindgut9 ± 22 of 4 0.21Down
Larval fat body21 ± 42 of 4 0.50Down
Larval trachea8 ± 31 of 4 0.18Down
Larval carcass11 ± 20 of 4 0.26Down
S2 cells (growing)17 ± 14 of 4 0.40Down
Whole fly43 ± 14 of 4

Looking for FBgn0026872. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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