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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026876 through 18771 annotations produced 1 hits



/// /// /// /// /// (CG11403 /// DereCG11403 /// DoreCG11403 /// DsimGD16432 /// DteiCG11403 /// DyakCG11403):

Annotation Number : CG11403
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026876
Gbrowse : chrX:1130904-1133892 (-) // 100.0 //
Probeset : 1626359_at
Accessions : protein= NP_569898;, nucleotide= NM_130542;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation /// 0006289 // nucleotide-excision
FlyMine data for FBgn0026876.
BDGP gene expression has embryonic in situ data for EG:33C11.2: 4 pix of staining in 1 body parts.
Homophila reports that CG11403 is a close match (1e-35) to human gene BACH1;BRIP1;FANCJ (NP_114432), a gene associated with Breast cancer, early-onset, 114480 (3);Fanconi anemia, complementation group J, 609054 (3).
VDRC has 1 RNAi stocks for FBgn0026876 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 23 of 4 0.20Down
Head14 10 of 4 0.20Down
Eye10 11 of 4 0.13Down
Thoracicoabdominal ganglion22 22 of 4 0.30Down
Salivary gland8 20 of 4 0.11Down
Crop15 20 of 4 0.20Down
Midgut11 30 of 4 0.20Down
Tubule4 00 of 4 0.10Down
Hindgut11 20 of 4 0.20Down
Heart7 20 of 4 0.09Down
Fat body3 10 of 4 0.05Down
Ovary196 74 of 4 2.60Up
Testis9 11 of 4 0.10Down
Male accessory glands12 30 of 4 0.20Down
Virgin spermatheca8 21 of 4 0.10Down
Mated spermatheca10 11 of 4 0.14Down
Adult carcass11 41 of 4 0.10Down
Larval CNS91 24 of 4 1.18None
Larval Salivary gland15 20 of 4 0.19Down
Larval midgut17 10 of 4 0.22Down
Larval tubule7 10 of 4 0.10Down
Larval hindgut11 10 of 4 0.15Down
Larval fat body3 10 of 4 0.10Down
Larval trachea33 44 of 4 0.44Down
Larval carcass16 13 of 4 0.22Down
S2 cells (growing)76 14 of 4 0.99None
Whole fly77 74 of 4

Looking for FBgn0026876. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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