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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026878 through 18771 annotations produced 1 hits



(CG4325):

Annotation Number : CG4325
Flybase ID : FBgn0026878
Gbrowse : chrX:1937091-1937760 (-) // 100.0 //
Probeset : 1640236_at
Accessions : protein= NP_569969;, nucleotide= NM_130613;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0026878.
BioGrid reports that CG4325 interacts with CG5140 CG6664 CG7386 CG8831 CG9046 CG9277 .
VDRC has 3 RNAi stocks for FBgn0026878 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head59 44 of 4 2.80Up
Eye21 32 of 4 1.00None
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland6 30 of 4 0.30Down
Crop6 20 of 4 0.30Down
Midgut16 20 of 4 0.80None
Tubule3 00 of 4 0.20Down
Hindgut7 20 of 4 0.40Down
Heart93 94 of 4 4.43Up
Fat body96 144 of 4 4.58Up
Ovary7 10 of 4 0.40Down
Testis8 00 of 4 0.40Down
Male accessory glands47 54 of 4 2.30Up
Virgin spermatheca59 54 of 4 2.83Up
Mated spermatheca66 64 of 4 3.13Up
Adult carcass61 44 of 4 2.90Up
Larval CNS3 10 of 4 0.14Down
Larval Salivary gland5 10 of 4 0.27Down
Larval midgut20 20 of 4 0.98None
Larval tubule6 10 of 4 0.30Down
Larval hindgut4 10 of 4 0.22Down
Larval fat body225 214 of 410.70Up
Larval trachea3 20 of 4 0.15Down
Larval carcass3 10 of 4 0.16Down
S2 cells (growing)4 10 of 4 0.23Down
Whole fly21 22 of 4

Looking for FBgn0026878. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime