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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0026879 through 18771 annotations produced 1 hits



(CG13364):

Annotation Number : CG13364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026879
Gbrowse : chrX:518790-519234 (-) // 100.0 //
Probeset : 1626443_at
Accessions : protein= NP_652500;, nucleotide= NM_144243;
FlyMine data for FBgn0026879.
VDRC has 5 RNAi stocks for FBgn0026879 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain425 ± 84 of 4 0.70Down
Head654 ± 244 of 4 1.00None
Eye641 ± 394 of 4 1.00None
Thoracicoabdominal ganglion482 ± 254 of 4 0.80Down
Salivary gland1268 ± 284 of 4 1.98Up
Crop779 ± 234 of 4 1.20Up
Midgut752 ± 344 of 4 1.20Up
Tubule585 ± 184 of 4 0.90Down
Hindgut756 ± 174 of 4 1.20Up
Heart621 ± 174 of 4 0.97None
Fat body991 ± 664 of 4 1.55Up
Ovary800 ± 134 of 4 1.30Up
Testis171 ± 24 of 4 0.30Down
Male accessory glands1532 ± 294 of 4 2.40Up
Virgin spermatheca788 ± 354 of 4 1.23Up
Mated spermatheca896 ± 424 of 4 1.40Up
Adult carcass483 ± 484 of 4 0.80Down
Larval CNS1224 ± 634 of 4 1.91Up
Larval Salivary gland2439 ± 324 of 4 3.82Up
Larval midgut884 ± 474 of 4 1.38Up
Larval tubule641 ± 64 of 4 1.00None
Larval hindgut1272 ± 214 of 4 1.99Up
Larval fat body585 ± 554 of 4 0.90None
Larval trachea1047 ± 664 of 4 1.64Up
Larval carcass850 ± 804 of 4 1.33None
S2 cells (growing)1172 ± 184 of 4 1.83Up
Whole fly639 ± 184 of 4

Looking for FBgn0026879. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime