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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0027052 through 18771 annotations produced 1 hits



CHIP (CHIP):

Annotation Number : CG5203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027052
Gbrowse : chr2L:10437550-10439244 (+) // 100.0 //
Probeset : 1623826_at
Accessions : protein= NP_477441;, nucleotide= NM_058093;
Pathway : 0000151 // ubiquitin ligase complex // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from seq
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activ
FlyMine data for FBgn0027052.
BDGP gene expression has embryonic in situ data for CHIP: 9 pix of staining in 2 body parts.
BioGrid reports that CG5203 interacts with CG5522 CG6203 CG6425 CG9938 CG5841 CG5848 CG5938 CG6819 CG6822 CG7815 CG7849 CG7989 CG6831 .
TRiP has 2 RNAi stocks for FBgn0027052 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027052 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain420 194 of 4 1.70Up
Head330 314 of 4 1.30None
Eye395 154 of 4 1.57Up
Thoracicoabdominal ganglion414 124 of 4 1.60Up
Salivary gland128 04 of 4 0.51Down
Crop257 44 of 4 1.00None
Midgut172 64 of 4 0.70Down
Tubule260 74 of 4 1.00None
Hindgut207 64 of 4 0.80Down
Heart181 184 of 4 0.72Down
Fat body181 124 of 4 0.72Down
Ovary421 114 of 4 1.70Up
Testis206 154 of 4 0.80Down
Male accessory glands225 134 of 4 0.90None
Virgin spermatheca175 64 of 4 0.70Down
Mated spermatheca186 74 of 4 0.74Down
Adult carcass155 124 of 4 0.60Down
Larval CNS212 204 of 4 0.84Down
Larval Salivary gland130 24 of 4 0.52Down
Larval midgut120 44 of 4 0.48Down
Larval tubule265 94 of 4 1.10None
Larval hindgut177 104 of 4 0.70Down
Larval fat body273 174 of 4 1.10None
Larval trachea137 74 of 4 0.54Down
Larval carcass136 64 of 4 0.54Down
S2 cells (growing)218 34 of 4 0.86Down
Whole fly252 64 of 4

Looking for FBgn0027052. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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